Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00380 ATGTTGACTTGCATTGCGTGTACCAAGCAACTCAACAATGGATCTCTTGGCCAAGAAGAAGAGGAAGAAGCTGTGCACACTCCCAGCACCAAGCAAGCCATCAAGGCTCTCACTGCTCAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCCTATAAGAGCTGCAGACCTTGTTCGGGGTCTTCCAATGGTAACAGGAATAGGAAGTATGCAGATTCAGATATGGGGTCAGATTCAGCAAGGTTCAACTGGGCCTACCGCAGAACTGGGAGTTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAATGGAAGGTGGTAGGGTGAAAGGGCTTTCCAGTGGGGAAGGAACACCGGCATCAGTGAGTGGACGCACTGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAGGAGTGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCGTTGCCTCAGGGAGGGAATGATCTCAAGCGGATACGGTTCAGTCGTGAAATGTTTAATAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAAAGGTTCAATCAGCAAGCAGTTCCCCTTCCAACCCCACCAAGATCTGAAGATGAGAGCTCAAAGATTGAATCTGCTAGGGACAGTCCTGTAACTCCTCCACTCAGCAAAGAGCGTGCACACCGTCACTTTCACCAACCAATGGGAATGGGCTACTCCTCATCAGATTCACTGGATCACCACCAAATGCAGTCTCACCCTTGCCACGAAACAAGCGGTCTGGCATTAGCGCCTAATGTTTCCAACATTAGTGCACCAAAGACAGAAAGATCATCCATCGATGCTTCAGTAAGGACTAGTTCATCGGAAGAAGAAGATCACTCGGGCGAGTTTTCAATCAGCAATGCCAGTGACATGGAAACTGAATGGGTTGAACAGGATGAACCAGGAGTATACATCACTATTAGAGCACTTCCAGGTGGAACCAGAGAACTCAGGCGTGTTCGGTTCAGCCGGGAAAAGTTTGGAGAAATGCATGCGAGATTGTGGTGGGAAGAGAACCGTGCTAGGATACAAGAACAATACTTGTGA 1110 0.4874 MLTCIACTKQLNNGSLGQEEEEEAVHTPSTKQAIKALTAQIKDMAVKASGAYKSCRPCSGSSNGNRNRKYADSDMGSDSARFNWAYRRTGSSNSTPRMWGKEMEGGRVKGLSSGEGTPASVSGRTESVVFMEEDEPKEWIAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERAHRHFHQPMGMGYSSSDSLDHHQMQSHPCHETSGLALAPNVSNISAPKTERSSIDASVRTSSSEEEDHSGEFSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQYL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00380 369 ProSiteProfiles BRX domain profile. 137 192 IPR013591 -
Cca11g00380 369 MobiDBLite consensus disorder prediction 268 291 - -
Cca11g00380 369 ProSiteProfiles BRX domain profile. 314 369 IPR013591 -
Cca11g00380 369 PANTHER PROTEIN BREVIS RADIX-LIKE 3 1 369 - -
Cca11g00380 369 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Cca11g00380 369 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 369 IPR044532 -
Cca11g00380 369 MobiDBLite consensus disorder prediction 200 311 - -
Cca11g00380 369 MobiDBLite consensus disorder prediction 52 76 - -
Cca11g00380 369 MobiDBLite consensus disorder prediction 55 70 - -
Cca11g00380 369 Pfam Transcription factor regulating root and shoot growth via Pin3 137 191 IPR013591 -
Cca11g00380 369 Pfam Transcription factor regulating root and shoot growth via Pin3 313 368 IPR013591 -
Cca11g00380 369 MobiDBLite consensus disorder prediction 91 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00380 Cca-Chr11 5019632 5023568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00380 1 369 Major Intrinsic Protein MIP AT1G31880 48.579 2.83e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00380 - - gmx:100805480 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00380 11 5019632 5023568 Cca11g00380 11 5019632 5023568 ECH