Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00378 ATGATGAAGAACTTATGGGAGAAAGACTCCAGTTCTACCCATTTAACATCTCCTTATGTTCTTGGACGCTCATCATGGGGGACTTCATCTGACTCTGATGTGCAACAATCATCTATGTCCAAAAGTTTGACCTTGAAAATGGGTGTTTTTCCTCAACAATACCGTAATACCAAGTCATTGAGTTTTCAATATCAAGACCGAGATTCTTCTTCAACTCAATCAACAGATCAGTCTTACCCAGAAGTGGCTTCAGCACAATCAGGTCAAATTTCAGTCCGGTGTAGCAATTCTTCTGTTTGTTCAACACTTAACACAACTGGAGTAAAGAGTGTGGAAAGTGTCATCAGGTCATCTATGGGGAGTCAGGATTTTACCTTCACTCCTTCACAACTGGGTCACAACCAATCACTTACTCATGCTGCATTCCACTTTGCTGAGCCATGCTTTGGTGGCCTACTACCTGCTGCATATGGACCACAGCCAAATGTTCATCATGCTCAGCTAGTAGGAATGGCTCCTGTTCGAATTCCTCTGCCGCTTGATCTTAGTGAGGAGCCCATCTATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGACAGTATCGTGCCAAACTTGAAGCGCAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTTCACGCACTGAAGAGAGCTAGAGGTTCTGGTGGGCGCTTCTTGAATACCAAAAAGCTCCAAGAGTCAAAGCTCACTCTGGCGAACCGTGGCCTAGATGTTTCAAGCCGTACTCAACTGAATCTTGGTGGAAATATGTCAGAAACTAAGGTGCATCAAGTAAAAAACTTGAACTACAGAGATGGTGTTTCCACAACCACCTGTTCTGATGTTACTAGTGCATCTAATAGTGATGGTGTCTTCCAGCAACATGAGTCAGACTTTAGGTTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTGCCGATATCAGTGGCTGTGGCGGCGGCAGCGGAAATCGACACCGTCTATCTGTCCTTATGTGA 1056 0.447 MMKNLWEKDSSSTHLTSPYVLGRSSWGTSSDSDVQQSSMSKSLTLKMGVFPQQYRNTKSLSFQYQDRDSSSTQSTDQSYPEVASAQSGQISVRCSNSSVCSTLNTTGVKSVESVIRSSMGSQDFTFTPSQLGHNQSLTHAAFHFAEPCFGGLLPAAYGPQPNVHHAQLVGMAPVRIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKLQESKLTLANRGLDVSSRTQLNLGGNMSETKVHQVKNLNYRDGVSTTTCSDVTSASNSDGVFQQHESDFRLCGYPSHIGRNMQGYSADISGCGGGSGNRHRLSVLM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00378 351 PRINTS CCAAT-binding transcription factor subunit B signature 186 208 IPR001289 GO:0003700|GO:0006355
Cca11g00378 351 PRINTS CCAAT-binding transcription factor subunit B signature 217 240 IPR001289 GO:0003700|GO:0006355
Cca11g00378 351 ProSiteProfiles NF-YA/HAP2 family profile. 183 243 IPR001289 GO:0003700|GO:0006355
Cca11g00378 351 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 185 240 IPR001289 GO:0003700|GO:0006355
Cca11g00378 351 ProSitePatterns NF-YA/HAP2 subunit signature. 188 208 IPR018362 GO:0003677|GO:0016602
Cca11g00378 351 MobiDBLite consensus disorder prediction 63 84 - -
Cca11g00378 351 Gene3D - 183 244 - -
Cca11g00378 351 SMART cbf3 182 243 IPR001289 GO:0003700|GO:0006355
Cca11g00378 351 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 315 IPR001289 GO:0003700|GO:0006355
Cca11g00378 351 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 20 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00378 Cca-Chr11 4935235 4940154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00378 10 349 CCAAT-HAP2 Transcription Factor Family AT1G17590 45.584 3.36e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca11g00378 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00378 K08064 - gmx:100500765 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00378 11 4935235 4940154 Cca11g00378 11 4935235 4940154 ECH
Cca10g00299 10 3199125 3201930 Cca11g00378 11 4935235 4940154 PCT