Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00377 ATGGACTCGCGCACACAGTATAATCCCCGCACCGTTGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGCTTTCCTGGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCGCCAGAGCTTCCTGAGCCCGTGCTGGGCATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTGTCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGGCACAGCAGCGGGCTCCGGAGTCTCAGGGTAGGCAGTCAAAGGCGTTGCAACCAAaagaggaggaagaagagctggatgaacaagaagatgatgaacatggagaGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAAAGAGCTCGCCCCTGA 768 0.4388 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPGEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQQRAPESQGRQSKALQPKEEEEELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00377 255 MobiDBLite consensus disorder prediction 150 177 - -
Cca11g00377 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cca11g00377 255 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Cca11g00377 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cca11g00377 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cca11g00377 255 MobiDBLite consensus disorder prediction 145 195 - -
Cca11g00377 255 Pfam PHD-finger 202 251 IPR019787 -
Cca11g00377 255 CDD PHD_AL_plant 201 251 IPR044104 -
Cca11g00377 255 SMART PHD_3 201 249 IPR001965 -
Cca11g00377 255 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 255 - -
Cca11g00377 255 PANTHER CPG BINDING PROTEIN 6 255 IPR045104 GO:0006355|GO:0042393
Cca11g00377 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00377 Cca-Chr11 4927048 4931890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00377 7 254 Alfin-like Transcription Factor Family AT3G42790 75.806 1.52e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca11g00377 Alfin 5.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00377 - - gmx:100170700 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00377 11 4927048 4931890 Cca10g00298 10 3194144 3197856 ECH
Cca11g00377 11 4927048 4931890 Cca11g00377 11 4927048 4931890 ECH
Cca10g00298 10 3194144 3197856 Cca11g00377 11 4927048 4931890 PCT