Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00375 ATGAGCATGAGTGTGGCTGAGGATGAATCTGGTGAAGAGGTTCATGTTCCGGGGGAGATTGATTGGCAAATGCTTGATAAGTCTAAGTTTTTCTTCCTTGGTGCTGCACTTTTCTCTGGGGTTTCTGCAACCTTATACCCTGTTGTTGTGTTGAAGACAAGGCAGCAAGTGGCTCAGTCTCAAGTTTCCTGCATCAACACTGCATTTTCACTGATTAGGGGTGAGGGTTTTAGGGCATTGTACCGTGGATTTGGGACTTCATTGATGGGTACAATCCCTGCTAGGGCTCTTTACATGGCTGCATTAGAGGTTACCAAGAGCAATGTTGGCACTGCCACTGTTAGGTTTGGGCTTGCTGAGCCCActgcagctgcagtggctaatgcagctgctggcctgagtgctgcaatggcagctcagctTGTGTGGACCCCTGTTGATGTTGTGAGCCAGAGGCTGATGGTTCAAGGTGGTTGTGATTCCACAAACCCTAAGGCTTCAGGTCTTAGGTACATCAATGGGATTGATGCCTTCAGGAAGATTTTGAGCAGTGATGGTCTAAGGGGCTTGTATAGGGGTTTTGGGATCTCAATTTTGACCTATGCCCCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAAAGAATGGTTTGGGGTGGAGTTGGGTACTACTTGTGCAAGGGAAGTGATAATACTACTACTGCATTGAAGCCTGATACAAAGACTGTGATGGCAGTTCAGGGAGTCAGTGCAGCTGTGGCTGGTGGCATGTCTGCTTTGATCACCATGCCACTGGACACCATCAAGACAAGACTGCAGGTCTTGGACAGCGATGACAACGGCAGCCGGCGAGGGCCGACGGTTATGCAGACGGTGAGGAGTTTGGTTAGGGAAGGGGGTTGGATGGCCTGCTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCAATGTCTGCAACAACTATGATCACAACTTATGAGTTCCTCAAAAGGCTTTCCACCAAGAATCAAGAGGTTTTGACATGA 1032 0.4535 MSMSVAEDESGEEVHVPGEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCINTAFSLIRGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGLAEPTAAAVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGGCDSTNPKASGLRYINGIDAFRKILSSDGLRGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLCKGSDNTTTALKPDTKTVMAVQGVSAAVAGGMSALITMPLDTIKTRLQVLDSDDNGSRRGPTVMQTVRSLVREGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSTKNQEVLT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00375 343 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 340 - -
Cca11g00375 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 334 IPR018108 -
Cca11g00375 343 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 340 - -
Cca11g00375 343 SUPERFAMILY Mitochondrial carrier 23 331 IPR023395 -
Cca11g00375 343 Pfam Mitochondrial carrier protein 125 219 IPR018108 -
Cca11g00375 343 Pfam Mitochondrial carrier protein 37 108 IPR018108 -
Cca11g00375 343 Pfam Mitochondrial carrier protein 248 338 IPR018108 -
Cca11g00375 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cca11g00375 343 Gene3D Mitochondrial carrier domain 29 341 IPR023395 -
Cca11g00375 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
Cca11g00375 343 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Cca11g00375 343 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Cca11g00375 343 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Cca11g00375 343 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00375 Cca-Chr11 4917794 4918825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00375 1 340 Chloroplast and Mitochondria Gene Families AT1G72820 74.493 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00375 K15121 - gmx:100784616 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00375 11 4917794 4918825 Cca10g00297 10 3190003 3191522 ECH
Cca11g00375 11 4917794 4918825 Cca11g00375 11 4917794 4918825 ECH