Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00371 ATGATGAATCTACAGGTATTTTGTGTTGGAAACATTGATTCTGTTAGGGTTATTGATGATTTTATTGGAATTTGGGATCCAAATGATTATAATTTGCTGGAGGAGGTGAAGAGGGTCGCTGAATCTGCTCATAGAATGAGAACCAAATTGGGCATTTATGCATATTTTAAGTTGCCTTATCCCCTTAAAAACTTAAGGAATGTTGCTGGGAGCCAGAAAACCAAACTAATGTTTCTCCCTAATGGAATGTCGAAAAGAGAGAAGAATCAGTCTAGATATGACAGAAGATTTAAGGACATATTTCAAGAGGTGTATGAAGAAAGGTGGAAGCAAAAGTTCGAAGAACACTCAATATGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCCAGGGCAAACTTGCACCACTTGGGTCAGTTTTTAGCTGGTAAACGTGCTGATGCTCCACAGGAAGCACTCCAGATTCTTGACATTGTATTGAGAGAGCTATCATCTAAGAGGTTTTGTCCAATCGGGAGATCCTTCTTTTCACCTGATATTAGAACACCTCAACAGCTTGGAGAGGGTTTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTCGTGATCGAGAAAATGAAATTTTGCGGGTACTTTGTTGGTTTTGA 654 0.3945 MMNLQVFCVGNIDSVRVIDDFIGIWDPNDYNLLEEVKRVAESAHRMRTKLGIYAYFKLPYPLKNLRNVAGSQKTKLMFLPNGMSKREKNQSRYDRRFKDIFQEVYEERWKQKFEEHSIWEREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQQLGEGLESWCGFYQSIRPRDRENEILRVLCWF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00371 217 SMART DUF1785_2 170 208 IPR014811 -
Cca11g00371 217 Pfam Argonaute linker 1 domain 171 205 IPR014811 -
Cca11g00371 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 109 204 - -
Cca11g00371 217 SUPERFAMILY PAZ domain 141 206 IPR036085 GO:0005515
Cca11g00371 217 PANTHER PROTEIN ARGONAUTE 10 109 204 - -
Cca11g00371 217 Pfam N-terminal domain of argonaute 101 161 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00371 Cca-Chr11 4880138 4882290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00371 120 203 Eukaryotic Initiation Factors Gene Family AT5G43810 86.905 2.13e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00371 K11593 - ccaj:109819045 170.244