Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00367 ATGTTCCACATGCAAACTTCTCCGTCATCCCTTGTAGCAGCAGGAGACGCCACCGTCATCGCCGTCAGTGGCGGCCGGCACAGCCATTCCGCGGTCAAATGGGCTGTGGAACACCTTCTAAAGAGGAACTCCTCATGTATCCTTATTCACGTTCAGACCAAGTCCATGCATGCCAATGATGTTGTTGACGTACCTAAACATGGTCGTACACCAACTGAAGAAGAATTGCACCAATTATTTCTTCCCTTTAGAGGGTTTTGTGCTCGAAAAGGGATCGCAGCAAAGGAATTGGTCCTGCATGACATTGATATTCCAAAAGCGCTTACAGATTACGTCGTTGAAAATTGTATCAGCACTGTTGTTATTGGTGCTGATACTTCCTCCTGGAATACTTTTATGAGGAAATTTAGCAAAGATGCAGATGTGCCAAATAGTTTATCGAAGTCTTTGCCAGAGAACTGCACTTTATACGTCATAGCAAAAGGAAAAGTACAACATATCCGACCAACAGGtcttccttatcatcaacatattcatcctcatcaacaacatattcatccccatcaacaacatATTAAGGTCAAACCAACTAAATCTATAAGAGACATAGTCACGCTCTTGAACAATGCCCCATTGGTTCATCCACATATGAATCTTGCAGAGACCTTTGTAGATTCTGAAGATATTACCATAAAATCAATCAAAGATCCAATTGGGAGGGACTCCGGCAAAGCTTGGGAATCTTTACGTGAACAAACAACATCGCATAAGCACAATGAAGGTAACAATTCACCAAGAGGTCCAGAAGAATACTCCTCATTACAAAATTCATCAACTAGAAGTTCTTCTGAAAACAGTGACAACACAGGGCAAATGCTTGATTCTCCTATGGCTGATAAGTCACGTGGAAACCATGAAGTAGCTGTAAACTCAGACAAGCCTAAGTCTCTAAAACCCCAAGTAGACTTAGAGATGGAAATGAGGAAATTGAAATTAGAATTGAGGAAAACAACGGAGAAGTATGGCATGGCTTGCAAAGAAGCTGTTATAGCAAAACAAAAGGCCACGGTGCTTGAAAAGTTTAGACAAGAAAAGGAACGCAATGTAGAAGAAGCTAGGCATGCTGAAGAGACTGCATTGGCTTTGGCAGAGGTAGAGAGGCAGAAAGCCAAAGCAGCTATGGAGTCGGCAGAAATGTCACAGCACCTGGCAGAAATGGAAATCCGAAAGAGAAAGGAAGTCGAACTAAGAGCCAAGCAAGAGGAAAAAGAGAGGAACAAAGAATTGCATGATGTTGTGTGTAATAGTATTCCATACAGAAGATACAAAACTGAAGAACTTGAAGCTGCAACAGATAACTTCCACGATGCTTTGAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAGAGGAGTGATTGATCACACTGTTGTTGCCATTAAGGCCTTGAGACCAGACCTAGTCCATGGAGAGAGGCAATTTCAACAAGAGCTTATTGTTTTGAGCACCATAAGGCATCCAAGCATGGTGCTCCTCCTAGGAGCATGCCCGGAGAACGGATGCctcgtgtatgagtacatggaaaacggcagcttagaagactgcctcttccacaaaaacaacactccaccaattccatggagaacgcgtttcaagatagcctcagagattgccacagcccttcttttcctccaccaaacaaagcccgaacccctcgtgcaccgcgaccttaagccagcaaacatcctcttggacaagaactacgtgagcaagatCAGTGACGTGGGTCTGGCACGCCTTGTTCCCCCTTCTGTGGCAGACAAAACGACACAGTATCGCTTGACAGGTGCAGCAGGAACGTTCTGCTACATTGACCCTGAGTATCAGCAATCGGGCTTGTTGGGTGTGAAATCAGACATATACTCATTAGGTGTGGTGCTGCTACAGATCATAACAGGGAAGTCTCCAATGGGTTTGTCACACTTGGTTGAGAAGGCTCTTCACAAAGGCACCTTCAGCGAGGTGCTTGATCCTAGTGTCACAGATTGGCCTGTGGAGGAGGCTATGGCATTTGCCAACTTGGCCTTGAAGTGTTGTGAGTTGAGAAAACGTGACAGACCGGATCTTGGTACTATCATTTTGCCTGAGCTTAATCGAATATCAGGGATATGGGATTTTGAAGAACAACCACGTTAG 2196 0.3862 MFHMQTSPSSLVAAGDATVIAVSGGRHSHSAVKWAVEHLLKRNSSCILIHVQTKSMHANDVVDVPKHGRTPTEEELHQLFLPFRGFCARKGIAAKELVLHDIDIPKALTDYVVENCISTVVIGADTSSWNTFMRKFSKDADVPNSLSKSLPENCTLYVIAKGKVQHIRPTGLPYHQHIHPHQQHIHPHQQHIKVKPTKSIRDIVTLLNNAPLVHPHMNLAETFVDSEDITIKSIKDPIGRDSGKAWESLREQTTSHKHNEGNNSPRGPEEYSSLQNSSTRSSSENSDNTGQMLDSPMADKSRGNHEVAVNSDKPKSLKPQVDLEMEMRKLKLELRKTTEKYGMACKEAVIAKQKATVLEKFRQEKERNVEEARHAEETALALAEVERQKAKAAMESAEMSQHLAEMEIRKRKEVELRAKQEEKERNKELHDVVCNSIPYRRYKTEELEAATDNFHDALKIGEGGYGPVFRGVIDHTVVAIKALRPDLVHGERQFQQELIVLSTIRHPSMVLLLGACPENGCLVYEYMENGSLEDCLFHKNNTPPIPWRTRFKIASEIATALLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVADKTTQYRLTGAAGTFCYIDPEYQQSGLLGVKSDIYSLGVVLLQIITGKSPMGLSHLVEKALHKGTFSEVLDPSVTDWPVEEAMAFANLALKCCELRKRDRPDLGTIILPELNRISGIWDFEEQPR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00367 731 Coils Coil 358 400 - -
Cca11g00367 731 ProSiteProfiles Protein kinase domain profile. 454 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00367 731 PANTHER OS02G0152300 PROTEIN 17 722 - -
Cca11g00367 731 CDD STK_N 18 162 - -
Cca11g00367 731 Coils Coil 320 340 - -
Cca11g00367 731 MobiDBLite consensus disorder prediction 299 321 - -
Cca11g00367 731 Pfam Protein kinase domain 455 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00367 731 Coils Coil 403 431 - -
Cca11g00367 731 Gene3D Transferase(Phosphotransferase) domain 1 527 723 - -
Cca11g00367 731 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 125 - -
Cca11g00367 731 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 17 722 - -
Cca11g00367 731 SUPERFAMILY Protein kinase-like (PK-like) 429 712 IPR011009 -
Cca11g00367 731 Gene3D Phosphorylase Kinase; domain 1 433 526 - -
Cca11g00367 731 SMART serkin_6 454 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00367 731 MobiDBLite consensus disorder prediction 249 321 - -
Cca11g00367 731 Gene3D HUPs 18 141 IPR014729 -
Cca11g00367 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Cca11g00367 731 MobiDBLite consensus disorder prediction 258 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00367 Cca-Chr11 4784459 4788919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00367 17 723 Receptor kinase-like Gene Family AT1G78940 45.742 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca11g00367 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00367 - - gmx:100799611 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00367 11 4784459 4788919 Cca11g00367 11 4784459 4788919 ECH
Cca11g00367 11 4784459 4788919 Cca10g00294 10 3174566 3178647 PCT