Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00358 atgggaaatcagaagcagaagtggacgcaagatgaagaagACGCGCTTATCGCAGGAGTGGAAAAGCATGGCCCTGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTCCTCACTTCTCGATCCAACATCGACCTCAAGGATAAATGGCGAAATTTGAGTGTCAGTAACGGTTCTCAAGGCTCCAAAGATAAATCTAGGGTTCCCAAGCTCAAAGCACTTCCTGCTCCTTCTACAACCGCCACCACCACTCTTCAAACTGCTGCTCCTGCTCCTCTAAACGCAGCGTCTGATGCTGCTGTCCCTGATCCTTCTCAAAATGAGCAGGATACCAAAAATTCTCCAAGGTATATTCCAATGATTTTTGAAGCTCTGTCAGCATTAAAAGATAGTAATGGATCCGATCTAAATGCTATTGTTAGTTTCATTGAGCAAAAACATCAAGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTGATCAAGGAAAACTTGAAAAGGTACATAATTGTTACAAGATAAAAAAGGACTCCTCCGTGGGGACAAAATCACCTGCACCAAAGCCAAAGGATGTCCGGCCACCACCACAACGGCAGTCCCCAGCTTCTGTCTTAATGGCATCTAATGAGTCGATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCGGCGGAAGCAGTGAAGGAGGCAGAAAAAATATCATTGCTGGTTGAAGATTGTGATTCCATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCGCGTGGTCAAATCATCCTCTTGGTTTAA 846 0.4173 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKSRVPKLKALPAPSTTATTTLQTAAPAPLNAASDAAVPDPSQNEQDTKNSPRYIPMIFEALSALKDSNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVDQGKLEKVHNCYKIKKDSSVGTKSPAPKPKDVRPPPQRQSPASVLMASNESIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEDCDSMLQLAKDIYEQCSRGQIILLV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00358 281 PANTHER SINGLE MYB HISTONE 4 1 280 IPR044597 GO:0003691
Cca11g00358 281 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca11g00358 281 MobiDBLite consensus disorder prediction 55 118 - -
Cca11g00358 281 Gene3D - 2 58 - -
Cca11g00358 281 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 280 - -
Cca11g00358 281 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cca11g00358 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca11g00358 281 SUPERFAMILY "Winged helix" DNA-binding domain 113 196 IPR036390 -
Cca11g00358 281 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cca11g00358 281 MobiDBLite consensus disorder prediction 103 117 - -
Cca11g00358 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Cca11g00358 281 CDD H15 118 196 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca11g00358 281 SMART sant 4 59 IPR001005 -
Cca11g00358 281 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Cca11g00358 281 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca11g00358 281 MobiDBLite consensus disorder prediction 184 210 - -
Cca11g00358 281 MobiDBLite consensus disorder prediction 79 94 - -
Cca11g00358 281 CDD SANT_TRF 6 56 - -
Cca11g00358 281 Gene3D - 112 199 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00358 Cca-Chr11 4626473 4630190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00358 1 280 Single Myb Histone (SMH) Gene Family AT1G72740 49.117 2.24e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g00358 Linker_histone 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00358 K09422 - gmx:778177 411.764