Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00353 ATGGAACCTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAGATTGGTAGCGGATCTTTCGGGGAGATCTATCTCGGAACTAATATTCAGACAAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAAACCAAGCATCCTCAATTGTTGTATGAATCAAAGCTGTATAAAATACTTCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTATGGTGTTGAAGGAGAGTACAATGTGCTTGTGATGGATTTGCTTGGCCCTAGTCTTGAGGATTTGTTCAATTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCAGATCAGATGATAAACCGAGTTGAGTATGTTCACTCCAAATCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGACACCACTACACATCAGCATATTCCTTACAGAGAGAACAAGAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGATACGTTCTTATGTACTTTTTAAGAGGAAGTCTTCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGCCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGTCGGTCACTGAGGTTTGATGACAAACCAGATTATGCTTATTTGAAAAGACTTTTACGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAAGTGCCACTGCCCCTGCTCGTGCTATTGGTTCTTCTGCCGGACCAAGTGCAGTTATGCCACCACTGGCTGCAATTACTGATGCACAGTTAGGTGGAGACGCTGCTAGGTATATTAATTGGTCTACATCAGATCCTACTCGTAGGAGAAACTCTGGACCTATTGCTAATGATGGAATCTTATCTAGACAAAAAGCCCCAGTTGCATATGACTCAACTGGATCTAAAGATGCTATGTTGTCAGGTTCTAATTTCTTCCGGTCAAGTGGATCTGCAAGGCGAGGTGCTGTTGCAGGCAGCCGTGATGTAGTTGCCAGCAGTGAGACCGAGTCCTCTCGTCCCGTGACTCTGGATTCAAGTCAGGGAACACTTCGTAAAATCTCTGGTCCTCAGAGAAATTCAGCTATCGTCTCATCTGAGCACAACCGAACATCCTCGGGCAGAAACGCATCGAACACAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTGCATTTCAATGAGGAGAGGGTACAATATTAG 1422 0.4269 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEYVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQSATAPARAIGSSAGPSAVMPPLAAITDAQLGGDAARYINWSTSDPTRRRNSGPIANDGILSRQKAPVAYDSTGSKDAMLSGSNFFRSSGSARRGAVAGSRDVVASSETESSRPVTLDSSQGTLRKISGPQRNSAIVSSEHNRTSSGRNASNTKNLETTLRGIESLHFNEERVQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00353 473 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 458 IPR030509 GO:0004672|GO:0005524
Cca11g00353 473 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00353 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00353 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Cca11g00353 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca11g00353 473 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00353 473 MobiDBLite consensus disorder prediction 400 454 - -
Cca11g00353 473 PANTHER CASEIN KINASE-RELATED 1 458 - -
Cca11g00353 473 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Cca11g00353 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca11g00353 473 CDD STKc_CK1_delta_epsilon 8 282 - -
Cca11g00353 473 MobiDBLite consensus disorder prediction 402 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00353 Cca-Chr11 4596901 4602473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00353 11 212 Receptor kinase-like Gene Family AT1G67720 28.095 8.94e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca11g00353 Pkinase 8.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00353 K02218 - gmx:100787808 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00287 10 3103974 3108351 Cca11g00353 11 4596901 4602473 PCT