Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00352 ATGACACGGGGGAGGATAAGGGCAAGGCTCCGGAGGAGCAATCTTTACACATTTGGTTGCCTTAAGCCTTCTACCATTGAGGAACCACCTCATCCACTTCAAGGTCCCGGGTTCACGCGAACTGTGCATTGCAACCAGCCTCAACTCCATGAAAAGAAGCCTCTATATTACTGCAAGAATGATATATCCACCACCAAGTACAATGTTATCACGTTTTTCCCCAAGGCACTCTTTGAACAGTTTCGTAGGGTTGCTAATATATACTTCCTTTTGGCTGCGTGTCTGTCAGCCTCGCCAATTTCGCCTTTCAGCCCACTGAGCATGATTGCTCCATTGGCATTTGTTGTGGGGCTTAGCATGGCAAAGGAGGCATTGGAAGATTCACGAAGGTTCGTTCAGGATGTTAAAATTAATCGCCGGAAGGTTAATCGCCATAAGGGTGATGGCGTTTTTGGTCCCAGGTCGTGGCAGAACATTATGGTTGGGGATGTGGTGAAAGTGAATAAGGATCAGTTTTTTCCAGCTGATTTGCTTCTCTTGTCCTCGAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGTCTACCTTGACTCTAGATAATGATGAAGTTTTTAAAGATTTCTCTGGAATAATACGTTGTGAAGACCCAAACCCCAATCTTTATACATTTGTTGGAAATCTTGAGTATGAGCGCCAGATTTATCCTCTTGATCCTAGTCAAATTCTTCTCCGAGATTCTAAGCTCAGGAACACTGATTACATCTATGGGGTGGTCATTTTCACTGGTCATGACAGCAAAGTCATGCAGAATTCCACAAAATCTCCTTCTAAACGGAGCACAATAGAAAAGAAGATGGATTATATCATATACACCCTCTTCACTGTCCTTATTTTGATATCTGTTATTAGTTCCATAGGCTTTATCATCAAGACTAAGTACCAAACCCCGCAGTGGTGGTACTTACGGCCTGACATTATTGAATACCAGTATGATCCCAATAAGATTGGAGTGGCTGGAATGAGTCATCTGATTACTGCGCTCATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCCATCGAGGTTGTAAAGGTTTTACAGGCAACCTTCATCAACCAAGATATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGATGCACGGACATCTAATTTGAATGAAGAGTTGGGTCAGGTAGATACTATCCTGTCAGATAAAACTGGAACCCTGACTTGTAATCAGATGGACTTTTTGAAGTGCTCCATTGCCGGTACTGCATATGGTGTGCGTTCCAGCGATGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATATTGATGATGCGGATTCAGATCTCTCCAATTTCCCTATGCCTAATACTAAATCGCAAGTTTCATGGGATAATGGTACAAGATCTGAAGAAATTGAACTGGAGACTGTTGTTACTTCCAAAGGAGATGAGGATCAAAAGCATACCATAAAGGGGTTTGGTTTTGAAGATGACCGCCTCATGAATTGTAATTGGTTGAAAGAGCCCAATGCTGATGACCTTTTGATGTTCTTCCGAATATTAGCAGTTTGCCACACTGCCATTCCTGAGCTGAATGAGGAGACTGGTGTTTATACATATGAAGCGGAGTCACCTGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTCTGTAGAAGGACTCAGTCAAGCATTTTCATACGTGAAAAATTTTCTGCTTCTGGGCAAGTGGTTGAAAGAGAGTACAAACTTTTGAATCTGCTGGATTTCACTAGTAAAAGAAAGCGGATGTCTGTGATTGTACGTGATGAAGAGGGCAGTACTTTTCTTATGTGCAAAGGGGCTGACAGTATTATATTTGATCGCATGTCTAAAAATGGAAAGATGTATTTGGAAGCTACAACCAGACATTTAAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCTTATAGACAGCTTGATGAGCAAGAGTACTCTGCTTGGAACAATGAATTTCAGAAAGCCAAATCATCTGTTGGGGCTGACAGAGATGCGGTGCTTGAGCGGGTATCAGATATGATGGAAAAAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTGCCCCAATGCATTGATAAACTTGCTCAAGCTGAAGATGATCTGAAGCACCAATTTTTGGGATTGGCTGTTGATTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTAACAAGGTTAGTGAAACAAGGTACTGGGAAGACTACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGCAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGACTTTGCGATTGCCCAGTTTCGATTTTTAGAGAGGCTTCTGGTTGTCCATGGACATTGGTGTTACAAGAGGATTGCACAAATGATATGTTATTTCTTCTACAAGAATATTGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTCACAGGCTTCTCTGGTCAGTCGGTTTATGACGACTGGTACATGATTTTGTTCAATGTTGTTTTGACATCATTACCCGTTATTTCCCTCGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCAGCACTGTATCAACAAGGACCCAAGAATTTGTTCTTTGACTGGTACAGAATATTGGGATGGATGGGCAATGGTCTCTATGCCTCTCTCATCATCTTCTTCCTTATCGTCACCATCTTCTATGACCAATCATTCCGTTCCGACGGCCAGACAGCCGACATGGCTGCTGTTGGGACCACCATGTTCACTTGCATCATCTGGGCTGTCAACTGTCAGATTGCGCTTACAATGAGCCACTTTACATGGATTCAGCACCTGTTTGTATGGGGAAGCATAACCACTTGGTACGTCTTCCTCTTGTTGTATGGAATGATGTCTCCAACATATTCCAAGACTGCCTACCAAATACTGGTTGAAGGGCTTGGTCCTGCCCCTATTTATTGGACAGCAACCCTTTTAGTCACAGTAACATGCAATCTTCCTTACTTTGCCCACATATCCTTCCAAAGATGTTTCAACCCCATGGATCATCACATCATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACACGGGAGCGCTCTAAAGCCAGACAGGATACCAAGATTGGTTTCACGGCAAGAGTGGAAGCAAAGATCAGACAACTGAAGGGAAAGCTGCAGAAAAAGCAATCTTCCTTTGCTATTTCAGCCCCATCGTGA 3411 0.4283 MTRGRIRARLRRSNLYTFGCLKPSTIEEPPHPLQGPGFTRTVHCNQPQLHEKKPLYYCKNDISTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFVQDVKINRRKVNRHKGDGVFGPRSWQNIMVGDVVKVNKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLTLDNDEVFKDFSGIIRCEDPNPNLYTFVGNLEYERQIYPLDPSQILLRDSKLRNTDYIYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFIIKTKYQTPQWWYLRPDIIEYQYDPNKIGVAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSDVELAAAKQMASDIDDADSDLSNFPMPNTKSQVSWDNGTRSEEIELETVVTSKGDEDQKHTIKGFGFEDDRLMNCNWLKEPNADDLLMFFRILAVCHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFIREKFSASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGSTFLMCKGADSIIFDRMSKNGKMYLEATTRHLNEYGEAGLRTLALAYRQLDEQEYSAWNNEFQKAKSSVGADRDAVLERVSDMMEKELILVGATAVEDKLQKGVPQCIDKLAQAEDDLKHQFLGLAVDCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQAADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYASLIIFFLIVTIFYDQSFRSDGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYVFLLLYGMMSPTYSKTAYQILVEGLGPAPIYWTATLLVTVTCNLPYFAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQDTKIGFTARVEAKIRQLKGKLQKKQSSFAISAPS 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00352 1136 Pfam Phospholipid-translocating P-type ATPase C-terminal 821 1071 IPR032630 -
Cca11g00352 1136 CDD P-type_ATPase_APLT_Dnf-like 60 952 - -
Cca11g00352 1136 MobiDBLite consensus disorder prediction 469 489 - -
Cca11g00352 1136 Gene3D - 419 431 IPR023214 -
Cca11g00352 1136 Gene3D - 493 731 IPR023299 GO:0000166
Cca11g00352 1136 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 747 - -
Cca11g00352 1136 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Cca11g00352 1136 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1067 IPR023298 -
Cca11g00352 1136 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 748 1134 - -
Cca11g00352 1136 MobiDBLite consensus disorder prediction 473 489 - -
Cca11g00352 1136 Gene3D - 432 447 IPR023299 GO:0000166
Cca11g00352 1136 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 747 - -
Cca11g00352 1136 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Cca11g00352 1136 Gene3D - 747 833 IPR023214 -
Cca11g00352 1136 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cca11g00352 1136 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Cca11g00352 1136 Gene3D - 113 288 - -
Cca11g00352 1136 SUPERFAMILY HAD-like 410 837 IPR036412 -
Cca11g00352 1136 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 722 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g00352 1136 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 748 1134 - -
Cca11g00352 1136 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 748 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca11g00352 1136 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Cca11g00352 1136 Pfam Cation transport ATPase (P-type) 546 651 - -
Cca11g00352 1136 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00352 Cca-Chr11 4588500 4596075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00352 1 747 Primary Pumps ATPases AT1G17500 72.460 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00352 K01530 - gmx:100819559 1378.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00286 10 3094095 3099927 Cca11g00352 11 4588500 4596075 PCT