Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00351 ATGGTTGCTACTGTACGTTGTGAAGAAATTGCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTATTCCTGGATTTGGGAAAAAGCTCAATTCACTCCTTGATACTTATTTATCGGAATATATTCTTCCTATAGCTCCTATGAACCTGAACAGATTCCTCTACCAGATTCAACAGAAGTTAATGGTTTTGATTGTTCAAGGTGCAAATAGTGATAGTTGTTGTTCAACTCAGCTTATCGATGGGGATGGTACATTCAATGTTTCTGGGATTGAAAAATTCATGAAGGAGGTGAAATTGGCTGAATGCGGGCTTTCATACGCTGTAGTTTCTATAATGGGTCCTCAAAGTAGTGGCAAGAGCACGCTATTAAATAATTTGTTTGGCACCAACTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTAATGGCATAGAGCCTTGTACACTTGTGATGGATTTAGAGGGTACAGATGGAAGAGAACGTGGCGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCGGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCTCAGGCCCACAAGGAAACCCCACTAAGTGAATTTTTCAACGTTGAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCTAGCTTGCGACAACGATTCCATCATTCTATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGCTCTGAGCAAATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGTTGTGAAGAAATTGCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTATTCCTGGATTTGGGAAAAAGCTCAATTCACTCCTTGATACTTATTTATCGGAATATGAGAATGTCATTAAAGTTTGTGCTTTAGATATGGATATTAACGATTTTAGCCATGGTGATCTAACCGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAGAGGCAAAGGATTCAACTAGCTCGAGCAGTTTACAATGATGCAGACATCTATCTCCTTGATGACCCATTCAGTGCAGTTGATGCACACACTGCTACTATTCTGTTCAATAACTGTGTCATGACTGCTCTAAGAGAGAAAACTGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAGGTTGATCAAATCCTGGTGATGGAGGGTGGAAAAGTTACTCAATCGGGTAGTTATGAAGATCTCCTGATAGCTGGGACTGCCTTTGAGCAACTTGTGAGAGCCCATAAAGCTGTATTAACTGGATTGGATCAAAAAAATGAAGATAATAGAGACTCTTATATGGAAGTTATGGTACATCCAAAAGAATCTAATAATCAAAGTGAGGGGGTGATTTCTACCAAGGGTCAACTTGGGGTTCAGCTTACACAAGAAGAAGAAAAAGAGATTGGCAGTGTTGGGTGGAAGCCTTTCTGGGATTATATTTCATTTTCAGGGGGATCATTCTTGTTGTGTTTAGTCATGTTAACGGAATTTGCTTTTATGGCTTTGCAGACTGCATCAACCTACTGGCTAGCTCTAGCCAGTGAAATTCCAAAAGTAACTAGTGGCTTTTTGATTGGAGTTTACTCATTATTTTCATTAGTTAGTATGGTATTTGTATATATAAGGTCTGTCTTGGCTGCTAATCTCGGACTAAAAGCTTCTAAAGCCTTCTTCTCAAGTTTCACTTCGGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGACTTAAGTATTTTGGACATTGATATTGCCTATACTCTCCCTTTAGTAGCATTTGTTGCACTTGAAGTTCTGGTGACAATATTTGCGATGGTTTCAGTCACATGGCAAGTTCTTATTGTTGCTGTTCCTGCTATGGTGGCTACAATATATATTCAGGGATATTATCAAGCCTCTGCAAGGGAATTGATGAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTTCCGCTGAGACATCACTTGGGGTGGTCACTATAAGAGCATTAAACATGGTCAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAGCACTATTCTTTCATTCTAATGCGGCCCTGGAATGGTCAATTTTAAGGATAGAGGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTGTTCTACTTCCCAAGGGATATGTACCTTCAGGTCTTGTGGGATTGTCTCTTTCTTATGCATTCACATTAAAAGATATCCAAGTATTTTGGAGTCGAATGTTTAGCATTTTATCAAACCATATCATCTCTGTTGAAAGAATCAAGCAATTTATTCACATACCAGCAGAGCCTCCTGCCATTTTGGAGGACAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCAAGCCCTAGAGATTAGATATCGTCCAAATTCTCCATTAGTTCTTAAGGGTATAAATTGTACATTTAAAGAAGGGAATAGAGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGTTTAGTTGAACCTTCAAGAGGGGATATTCTTATAGATGGGATTAATATATGCTCAATGGGGTTAAAAGATTTGAGAATGAAACTCAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACTTGGACCCTCTAGGCTTTTATGACGATGATGAAATATGGAAGGCTATAGAGAAATGTCAGCTGAAGGAAACAATCAGCAAGCTACCAGGTCTCTTGGATTCTTCAGTGAGTGACGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCTAGGAAGAGTACTACTTAAGAGGAACAGAATACTTGTTCTAGATGAAGCTACTGCATCTATCGACTCTGCAACAGATGCCATTCTGCAAAAAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGATATGGTCATGGTCCTGTCTTATGGGAACCTAGTGGAATATGATGAGCCTTCCAAACTTATGGGAACCAATTCTTGGTTCTCTAAGTTGGTCGCTGAATATTGGTCGAGCTGCAGGAAGAACTCCTCCCCAAATATTAGCTAG 3561 0.4041 MVATVRCEEIANEKYASFVANEDWCQLEEAVQSGPIPGFGKKLNSLLDTYLSEYILPIAPMNLNRFLYQIQQKLMVLIVQGANSDSCCSTQLIDGDGTFNVSGIEKFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCNGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSFEEKEEQFREQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSSEQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYASFVANEDWCQLEEAVQSGPIPGFGKKLNSLLDTYLSEYENVIKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAHTATILFNNCVMTALREKTVILVTHQVEFLSEVDQILVMEGGKVTQSGSYEDLLIAGTAFEQLVRAHKAVLTGLDQKNEDNRDSYMEVMVHPKESNNQSEGVISTKGQLGVQLTQEEEKEIGSVGWKPFWDYISFSGGSFLLCLVMLTEFAFMALQTASTYWLALASEIPKVTSGFLIGVYSLFSLVSMVFVYIRSVLAANLGLKASKAFFSSFTSAIFNAPMLFFDSTPVGRILTRASSDLSILDIDIAYTLPLVAFVALEVLVTIFAMVSVTWQVLIVAVPAMVATIYIQGYYQASARELMRINGTTKAPVMNFSAETSLGVVTIRALNMVNRFFNNYLKLVDMDAALFFHSNAALEWSILRIEVLQNLTVFTAALLLVLLPKGYVPSGLVGLSLSYAFTLKDIQVFWSRMFSILSNHIISVERIKQFIHIPAEPPAILEDNRPPSSWPSKGRIDLQALEIRYRPNSPLVLKGINCTFKEGNRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGFYDDDEIWKAIEKCQLKETISKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQKVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGNLVEYDEPSKLMGTNSWFSKLVAEYWSSCRKNSSPNIS 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00351 1186 Pfam ABC transporter transmembrane region 627 874 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00351 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1171 IPR027417 -
Cca11g00351 1186 Coils Coil 298 318 - -
Cca11g00351 1186 ProSitePatterns ABC transporters family signature. 450 464 IPR017871 GO:0005524
Cca11g00351 1186 Pfam ABC transporter 955 1103 IPR003439 GO:0005524
Cca11g00351 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 547 IPR027417 -
Cca11g00351 1186 CDD ABC_6TM_ABCC_D2 620 913 IPR044726 GO:0140359
Cca11g00351 1186 Gene3D - 393 571 IPR027417 -
Cca11g00351 1186 Gene3D - 922 1172 IPR027417 -
Cca11g00351 1186 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 418 1183 - -
Cca11g00351 1186 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 126 361 - -
Cca11g00351 1186 Pfam ABC transporter 440 477 IPR003439 GO:0005524
Cca11g00351 1186 Gene3D ABC transporter type 1, transmembrane domain 589 919 IPR036640 GO:0005524|GO:0016021
Cca11g00351 1186 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 626 885 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00351 1186 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 117 332 IPR030386 GO:0005525
Cca11g00351 1186 CDD ABCC_MRP_domain2 936 1156 - -
Cca11g00351 1186 SMART AAA_5 119 525 IPR003593 -
Cca11g00351 1186 SMART AAA_5 964 1149 IPR003593 -
Cca11g00351 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 356 IPR027417 -
Cca11g00351 1186 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 264 548 IPR003439 GO:0005524
Cca11g00351 1186 Gene3D - 94 326 IPR027417 -
Cca11g00351 1186 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 418 1183 - -
Cca11g00351 1186 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 940 1172 IPR003439 GO:0005524
Cca11g00351 1186 SUPERFAMILY ABC transporter transmembrane region 611 920 IPR036640 GO:0005524|GO:0016021
Cca11g00351 1186 CDD GBP 116 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00351 Cca-Chr11 4525887 4535051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00351 418 551 Calmodulin-binding Proteins AT2G36910 27.941 3.98e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00351 - - gmx:100804798 1319.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00351 11 4525887 4535051 Cca11g00351 11 4525887 4535051 ECH