Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00350 ATGTCTTCGAATATTCCGAAGAAGtacgatgtgtttctgagtttcagaggagcagacacgagaacaaacttcaccagccatctttacactgctctcactcacaaatcaatcaaaacgttcatagatcaccagctcaacagaggagaatacgtttggccaacacttgccaaagcaatcagggactcccacgtctcaatcgttgtcttctccgaaaactacgcgtcctccacgtggtgcttgaaggagctggtgaaaatactcgaatgcagaagagagcagggtcaggttgttatacctgtgttctacaaggtggatcccacccacataaggaatcagagtggaagttacgagaaggcatttgcaaagcatgagcgagaacttggtggcagtcgcatagaactagatgttttcaagtggaaagctgctctcaaagaagcagccaatatatcaggatgggacttccaaactcacagggacgaatctcacgtcatcgagaatgttgtcaatgatgtattgcaaaagctgcagctgagataccctactgaactaaaaggccttgtgggaactgaaaaaatttgtcagaaggtagaattattactgaaaaaatttagtgtcattggaatttggggtatggggggaattggtaagtcaactattgctaaagtcttgtttgaaaaaatatttcacaaatatgataatgtctgctttgtggccaattcaaaggaatattccctcgacaagcttttctttgcactattgaaggaggaagttcccccctcaaatgtggtaggatccgcatttgatatgagaaggctcagtagtaaaaaggttttcattgtacttgatgatatggatagtttagattcgtttgagtttttatgtagagagtatggtgacttacatagcgatagtaaactcattataacaacaagagataggcaattgcttcatgaaagagttgagtggatatacaaagttaagaaatggaaaaatccagaatctctgaagcttttttgcttagaagccttcaagaaaaggcatcccccaaaacgttatcagagtctctcagaaagtgcagttgaatatgctggtggcgttccattagctcttaaagttttgggttcatatcttcattccaaaggcattgatttttggaaaagtactttaagaaaactcaacgagtatcctaatgagaagattcagaatgtgctaaaagtgagctataatggattggatgatctagaaaggaatatatttctagacattgcattttttttcaaaggaaaaaagaaagatcatgtcacgaggatattagatgcctgtcgatttgaggcaaccagtggaatagaagttctcgaagacaaagctttgataactatttcaaatagcaaaataattcaaatgcatgacttgctgcataaaatgggtttggagatagtacgtcaagaatgtaaaggagatcctagaaaacgtagtcgattgaaggataatgaagctcgtgaagtgatcgaaaaaaacaagggaactgatgcaattcaaggcataacattagatttgtctcaaattaaagacttagttttgcatgctgacacattcacaaagatgaaaagcttaagatttctgaaattctatagcaccttgggccagagttctagtaatacttacctcaaccttcctgaaactcttgagccattttctgataaactgaggtacattgagtggattggatacccttatgagtctcttccatcacctttctgtgctaagttgcttgttgagattcacatgccacgcagcaatgttaaacaactttggcaggggatccaggaacttgacaatttagagggaattgacctaagtgaatgcaaacaatttgaagagtttccagatttgtcaacagcgccaagacttaaatgggtgaatctctcctattgtgaaagtttgttgtatcttcatccatctattttatcctcggacacacttgTTACTTTGATACTGGATAGGTGTACAAACCTTAAGAGAGTTAAAGGTGAGAAGCATTTAAAATGTCTAGAGAAGATCAGTGTCAATGGCTGCTTAAGTCTGGAGGAATTTGCAGTGTCATCAGATTTAATTGAAAACTTGGATTTGAGCAATACAGGAATCCAAGCATTGGACACATCAATAGGGCGTATGCATAACCTTAAGTGGCTCAATCTAGAGGGTTTAAGACTCGGGCATCTTTTGATGGAGTTGTCTTGCTTGACATCTCTCAAGGAGTTGAAGCTTGCTGATAGTGGACTAGTGATTGACAAGCAACAACTACTTGTCCTATTTGATGGGTTAAGGTCCCTAAAAATACTATATTTGAAGGATTGTAGTTACTTGTTTGAGCTACCTGACAACATCAGTGTGTTATCACAATTACAAGAACTAAGGCTAGATGGAAGCAATGTGAAAAGGTTGCCTAAAAGCATTAAGAATCTTCAAGAGTTGGAAATTCTGTCCTTGGAGAATTGCAAGGAGCTTCAGAACCTACCAATGCTTCCATCCCTCATCCAATACTTAGGTGCCATTAACTGCACATCATTGGTGAAAGTGTCAAACTTAAACACTTTGGCAACAAAGATGTTGGGAATGACCAAACGCATTACATTCAAGAACAGCTTGGAATTGGATGGACAATCACTCGAACATATTATGGAAAGCCTCCATTTAACAATGATGAGTGCTGCATTTGACAATGTTTTAGTAAGAATCCGTGGGGCGGTCAATGGTTACAATTACAATAGTGTTGAGCTTTGTTTACAAGGAAGCAAGGTCCCATGGCAGATCACTCATAAAACTACTAAGTCCTTCATTAGCATTGAACTTCCCAATCGCTCCAACTTGCTGGGATTAATTTACTCAGTGGTTCTTTCTCCAGCTGGTGGAATGAAGAAGCATGGCACTAAGATAAAATGTAAATGCCACTTTGCAGAAGAAGGTATGAAGGAAGCATGGCTATCTAGTGATATTGGGGGATTGAACTCGGATCATGTTTATGTGTGGTATGATCCATTCCACTGTGACAGTATTCTCAAATATTATGAACCAAAGGTTTGTTTTGAGTTCTGTGTTGCAAATGATGAGGGGGAAGTTGATGGCTCCATTTGTATTAAAGAGTGTGGAATACGCCTTATAAGTGTTTCGGATGTGCAGAGTGTTTTAGAAGAGTTGAACTTGGATTCAAATAAGAAAAAGGACTTTGAGAAGGGAGTGAAGCTGGAAACAGGACAAAAGATAACTTTCAGAACAATTGAACAATATGATGTGGAGGAAAGTAATGGCATAAGAAACCAGATAGGGAATATACGAGAGGAATTGAGTGAAGAAAGCTCCTCTGATAATATAATAGGAATAAAGATCTTTGAGAGGAAAGAAAATTGGGAAAGTGATGACGAGGAACCTCTTGAGATCTCGAGAAAAAGAAAAGGTAGGGCTAAACCCAAGGGATTGGTCACCAGAAAAAAGACCTTTCAAAGCTATTCAAAATTAAAGAAGCTCAAAAAACAGAAAGGATCTTTGGAGTCTTCAAACGATTCAGCTGTTCGACCAGAAACATGTTTTGAAAAAGAACCTACCACTGCAGAAGATGGTGGTAGCAAACCAGCACAATTTGAAGCAAAATTTGCTTCCAGTACGGATGATAATGAATCTCGAAAGCAGAAAGTGGATATGGAATCTGTTTCTGAACCAGCTCAGGGGAAAAGTCAATCCCTAGAGGAAGAGCCTGCTTTGAATCAAGAGGCTATAGAATCATCTTTTACAAATTCATATGAAGAAGAAGAAATAGCTCCCAGTGTTGAACCAAACAAAGAGGCATTAGGGGTTTTACCATCTCAAGATCAACCAGACGTTGGAACCAGTAAGGTGATTTCAGAACACACCCCTATGGAGATTGATGATTATCTAAACAAACTTGATGATGATCCCTTTGCACTCCTCGATTTCCTATCAAGTAATGTTTCAATTTCATCCAAGCTATCGCAAACTACAATTCAACAGTCTGACTCAACTGAAAACATTTCTACCATTCTTCAAGAACTTCGATCTTTGGCCTTCTCTCAATCTTTGTTGTGCAACATTCAACGAGTTGAATACAGAGAACAAGTTGAGGAAACTTTGAAGAAACTTGATAATTATGTTCAAGATCTATCTGAGAGCCAAAACAAGGGGCTAGATGAATTCATTGCCCTCTACAAAAAAGTAGTGACAATTTGCATGGACAAATCCTTGAATGAAGAAAAGGTCAAAAAGATTGAAATTGAGAAAAAGCAAGCTTTTGACAAAATTCTAGATTCCAAATCTAAAGTTCAAAAGCTAGATGATGTTGTTTCAATGAATAAGGTTAAAATTGAGACTGTGGAAAAACGCCAAAAAGAGATACAAGATGCCATCAAGAAATTAGAAGAAGAAAACGAGGGCTTAAATAAAGAGAAGACTAAACTTGAAACTGCCAACTCGAAGCATTTGACCAATAAAGAAGAAATTATTGAATCTGTCAAGTATATTTCAACTTCATTGGGCAAGGTAGTGAAAAATCTTGCTGAACTTGACAAGGAGAGATTAAGGTTAAATGCAGATTTTGAGAATCTGAAGGAGCCTTACAAAAAGATGAAGAGAAGCCCTCCATTTTAA 4659 0.2194 MSSNIPKKYDVFLSFRGADTRTNFTSHLYTALTHKSIKTFIDHQLNRGEYVWPTLAKAIRDSHVSIVVFSENYASSTWCLKELVKILECRREQGQVVIPVFYKVDPTHIRNQSGSYEKAFAKHERELGGSRIELDVFKWKAALKEAANISGWDFQTHRDESHVIENVVNDVLQKLQLRYPTELKGLVGTEKICQKVELLLKKFSVIGIWGMGGIGKSTIAKVLFEKIFHKYDNVCFVANSKEYSLDKLFFALLKEEVPPSNVVGSAFDMRRLSSKKVFIVLDDMDSLDSFEFLCREYGDLHSDSKLIITTRDRQLLHERVEWIYKVKKWKNPESLKLFCLEAFKKRHPPKRYQSLSESAVEYAGGVPLALKVLGSYLHSKGIDFWKSTLRKLNEYPNEKIQNVLKVSYNGLDDLERNIFLDIAFFFKGKKKDHVTRILDACRFEATSGIEVLEDKALITISNSKIIQMHDLLHKMGLEIVRQECKGDPRKRSRLKDNEAREVIEKNKGTDAIQGITLDLSQIKDLVLHADTFTKMKSLRFLKFYSTLGQSSSNTYLNLPETLEPFSDKLRYIEWIGYPYESLPSPFCAKLLVEIHMPRSNVKQLWQGIQELDNLEGIDLSECKQFEEFPDLSTAPRLKWVNLSYCESLLYLHPSILSSDTLVTLILDRCTNLKRVKGEKHLKCLEKISVNGCLSLEEFAVSSDLIENLDLSNTGIQALDTSIGRMHNLKWLNLEGLRLGHLLMELSCLTSLKELKLADSGLVIDKQQLLVLFDGLRSLKILYLKDCSYLFELPDNISVLSQLQELRLDGSNVKRLPKSIKNLQELEILSLENCKELQNLPMLPSLIQYLGAINCTSLVKVSNLNTLATKMLGMTKRITFKNSLELDGQSLEHIMESLHLTMMSAAFDNVLVRIRGAVNGYNYNSVELCLQGSKVPWQITHKTTKSFISIELPNRSNLLGLIYSVVLSPAGGMKKHGTKIKCKCHFAEEGMKEAWLSSDIGGLNSDHVYVWYDPFHCDSILKYYEPKVCFEFCVANDEGEVDGSICIKECGIRLISVSDVQSVLEELNLDSNKKKDFEKGVKLETGQKITFRTIEQYDVEESNGIRNQIGNIREELSEESSSDNIIGIKIFERKENWESDDEEPLEISRKRKGRAKPKGLVTRKKTFQSYSKLKKLKKQKGSLESSNDSAVRPETCFEKEPTTAEDGGSKPAQFEAKFASSTDDNESRKQKVDMESVSEPAQGKSQSLEEEPALNQEAIESSFTNSYEEEEIAPSVEPNKEALGVLPSQDQPDVGTSKVISEHTPMEIDDYLNKLDDDPFALLDFLSSNVSISSKLSQTTIQQSDSTENISTILQELRSLAFSQSLLCNIQRVEYREQVEETLKKLDNYVQDLSESQNKGLDEFIALYKKVVTICMDKSLNEEKVKKIEIEKKQAFDKILDSKSKVQKLDDVVSMNKVKIETVEKRQKEIQDAIKKLEEENEGLNKEKTKLETANSKHLTNKEEIIESVKYISTSLGKVVKNLAELDKERLRLNADFENLKEPYKKMKRSPPF 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00350 1552 PRINTS Disease resistance protein signature 820 836 - -
Cca11g00350 1552 PRINTS Disease resistance protein signature 271 285 - -
Cca11g00350 1552 PRINTS Disease resistance protein signature 205 220 - -
Cca11g00350 1552 PRINTS Disease resistance protein signature 363 377 - -
Cca11g00350 1552 Pfam TIR domain 8 181 IPR000157 GO:0007165
Cca11g00350 1552 Gene3D - 6 171 IPR035897 -
Cca11g00350 1552 Coils Coil 1371 1398 - -
Cca11g00350 1552 Gene3D - 172 323 IPR027417 -
Cca11g00350 1552 PANTHER NB-ARC DOMAIN PROTEIN 7 1451 - -
Cca11g00350 1552 Coils Coil 1459 1496 - -
Cca11g00350 1552 Pfam NB-ARC domain 202 409 IPR002182 GO:0043531
Cca11g00350 1552 Pfam Leucine Rich Repeat 591 609 IPR011713 -
Cca11g00350 1552 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Cca11g00350 1552 ProSiteProfiles TIR domain profile. 7 175 IPR000157 GO:0007165
Cca11g00350 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 422 IPR027417 -
Cca11g00350 1552 SMART till_3 8 149 IPR000157 GO:0007165
Cca11g00350 1552 Gene3D - 330 412 IPR042197 -
Cca11g00350 1552 MobiDBLite consensus disorder prediction 1238 1253 - -
Cca11g00350 1552 MobiDBLite consensus disorder prediction 1220 1234 - -
Cca11g00350 1552 SUPERFAMILY L domain-like 467 857 - -
Cca11g00350 1552 MobiDBLite consensus disorder prediction 1138 1161 - -
Cca11g00350 1552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 1451 IPR044974 GO:0006952
Cca11g00350 1552 MobiDBLite consensus disorder prediction 1177 1253 - -
Cca11g00350 1552 Gene3D Ribonuclease Inhibitor 478 703 IPR032675 -
Cca11g00350 1552 Gene3D Ribonuclease Inhibitor 704 897 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00350 Cca-Chr11 4518725 4524842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00350 775 870 WRKY Transcription Factor Family AT4G12020 32.292 4.46e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00350 - - vun:114165831 1740.32