Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00346 ATGGTTACAACGGTGAGGCCTGTGGACTATGAGTCAAAGGAGGGAGAGATCACATTCAGAACAATGAGCTTCAAGAAGTGCAGAAACCTTGATGAGTTGTATCAGCCGGATGAGTTGGATGAGGTTGTTATTACTGAAAAATCTACAAGCTCAAAGAGAAGGAAAGTGGGGAATCTGAAGCTGCAAACCACATTCTCCTTCAAGTATCTACTTTCTCATAATTCTGGTTCAAAAGAGGAAGTTGATGATGGTTTGTTCATTCAACAAAGTCCCACAATTATGTTGCCTAAACCTGAAATTTTGTTCTCACCAAAGTCCATTGGAGAGCTTGATGTGGCTGCAATAAAGCTGCAGAAGGTTTACAAGAGCTACAGGACTAGAAGAAATCTTGCAGATTGTGCAGTTGTCTGTGAGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCTCTTAGCCGGTGTTCCACTTCACATTTTGACTCTGGTAAATCAGAAACAGCTATTGCAAAATGGGCAAGGGCTAGGACCATGGCTGCTAAGGTGGGAAAAGGTTTGTGCAAAGATGATAAGGCGCAGAAATTGGCTCTAAGGCACTGGCTTGAAGCCATTGACCCACGTCATCGTTATGGGCACAATCTACACTTATACTATGATGTTTGGTTTCATAGCCAGAGTTCACAACCCTTTTTCTACTGGTTGGATGTTGGAGATGGAAAAGAAGTAAATCTTGATGAGTGCCCAAGAAGTGAATTGTATAGGCAGTGCATAAAGTATCTTGGACCCAAAGAGAGGGAAGCGTATGAAGTGATTGTTGAGGGAGGAAGGCTTGTTTATAGAAAAAGCCAGAACCTTGTACACACTATTGAGGGATCTAAGTGGATTTTCGTTCTTAGCTCATCTAGAATTTTGTACGTTGGGGAGAAAAAGAAAGGCCAATTTCAGCACTCAAGTTTTTTAGCTGGGGGTGCTACTATTGCTTCTGGAAGATTGGTTGCCCAAAATGGAGTTCTTGATGCTATATGGCCCTACAGCGGTCACTACTGTCCTACAAAGAAGAACTTTATGGAATTCATTGGCTTCTTGATGGAACATAAAGTGGACTTGACAAATGTAAAGAAGTATGCAATTGATGATGATATCCCACCTTCAAAACCTATTGATGAGGAGCTACAGTTTGAGTCCAAAAGGGGTAACAATGCTAGTTCAAGTGACATTGCCACTGCCAAAAAATGCACTCAAGATAGCATGGTTCACTCTGGTGGCAACATGGAAACTTCAGAACTTAAAGAGATGAAGCCACTGTCAATAAAATGGACTACTGGAGTTGGTCCTAGGATTGGTTGTGTGAGAGAGTACCCTACAAAGCTCCAAGTTAAGGCACTTGAACAACTCCATCTATCACCAAGAGTCAACCTTGGAAAAGTTGCTAGCAAGGCACCAATTCCCTCACCAAGACCAAGTCCAAAAATTCACCTATCCCCTAGGCTTGCACACATGGGAATTCCTAGCACATGA 1512 0.4246 MVTTVRPVDYESKEGEITFRTMSFKKCRNLDELYQPDELDEVVITEKSTSSKRRKVGNLKLQTTFSFKYLLSHNSGSKEEVDDGLFIQQSPTIMLPKPEILFSPKSIGELDVAAIKLQKVYKSYRTRRNLADCAVVCEELWWKALDFAALSRCSTSHFDSGKSETAIAKWARARTMAAKVGKGLCKDDKAQKLALRHWLEAIDPRHRYGHNLHLYYDVWFHSQSSQPFFYWLDVGDGKEVNLDECPRSELYRQCIKYLGPKEREAYEVIVEGGRLVYRKSQNLVHTIEGSKWIFVLSSSRILYVGEKKKGQFQHSSFLAGGATIASGRLVAQNGVLDAIWPYSGHYCPTKKNFMEFIGFLMEHKVDLTNVKKYAIDDDIPPSKPIDEELQFESKRGNNASSSDIATAKKCTQDSMVHSGGNMETSELKEMKPLSIKWTTGVGPRIGCVREYPTKLQVKALEQLHLSPRVNLGKVASKAPIPSPRPSPKIHLSPRLAHMGIPST 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00346 503 MobiDBLite consensus disorder prediction 394 420 - -
Cca11g00346 503 PANTHER CALMODULIN-BINDING FAMILY PROTEIN 4 501 - -
Cca11g00346 503 MobiDBLite consensus disorder prediction 475 503 - -
Cca11g00346 503 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 4 501 IPR044159 -
Cca11g00346 503 MobiDBLite consensus disorder prediction 392 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00346 Cca-Chr11 4484540 4488367 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00346 - - ccaj:109809343 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00346 11 4484540 4488367 Cca10g00279 10 3025901 3037024 PCT