Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00345 ATGGGTGGTTCAGGAAGATGGCTTAAGTCGCTCATTCCTCTCAGAAAGGCCTCCCCATCTGATCAAGAGAAGGGTGTTGATAAGAGTAAGAGAAAGTGGAAGCTATGGAGGAGCAGTTCAGAAGGGTTTGGGATTGGATGCTCCATGAAGAAGGGGCAGGGTGGTGGTGGTGCTTCCTTTGTGGTGGATGATGGAGCATTTGCTGCTGCTATGGCTGCTGTGGTCAGAACTCCACTCAAAGACTTCATGGTGATCAAGCAGGAATGGGCTGCCATTCGAATCCAGGCAGTGTTTCGAGGTTTCTTGGCAAGACGAGCTTTAAGGGCCCTGAGGGCAGTGGTGAGGTTGCAGGCCATATTTCGCGGTTGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTGCGAGTTCAAGCACGGGTCAAGGCAAGGAATGCGAAGAATTCTCCAGAGGGGAATGCTAATGAAGATGATCCTGTTAAGCAGGCTGAGAAAGGGTGGTGTGACATTCCAGGAACTGTGGAAGAAGTTAAGGCGAAATTACAAATGAGACAGGAAGGAGCAATTAAGAGAGATAGAACAAAGGCATACTCTCTATCTAAGCAGAAATCCACACCAAGTGCTAGTCCAAATTCAAGAGCTTCTAAGCCAGTTATTCCTCTCAAGCACTGCAGCCGAGAAAGCAAGAGCTCGGGATGGAGTATGTTAGAACGCTGGATGGCTGCAAAGCCATGGGAGAGCAGGTCGATGGAAGAGATGTATCTGGACTCGCCTGACAAGACTCCAGTGACCAGTAAAAGTGATCATTTTGTTCTTCCCTTTAATTCAGATAAACAAAATGACTCAGTCAAAGCAAGAAGGAATGGTGTGACAACCAGAATTTCATCTAAATCTCTTGCAACTAGTCAATCAACTCCATCATCTTCAGCCATAAGCTCGGAATGCATGTATGATGATAGCCCTATGTCAACTTCATGCACATCTGAATCACCACCTCTACCATCTACCAACAATGTTATGGTGGAAGCAACAGAAGAAAGAAATGTTTTTAAACCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCAAAGAGAATCTTCATGGATGATTGTGTGTCACTAAATGGAGTTACTAGATGCAGTTCTGGTTCCTATCCTTCTGCCAATATGTGGAAGAATGTCTATGCAACACCTCTTAGGACAAGTTATCAAAAGCGATATACATTAGAAGATAAGTAG 1290 0.4496 MGGSGRWLKSLIPLRKASPSDQEKGVDKSKRKWKLWRSSSEGFGIGCSMKKGQGGGGASFVVDDGAFAAAMAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNAKNSPEGNANEDDPVKQAEKGWCDIPGTVEEVKAKLQMRQEGAIKRDRTKAYSLSKQKSTPSASPNSRASKPVIPLKHCSRESKSSGWSMLERWMAAKPWESRSMEEMYLDSPDKTPVTSKSDHFVLPFNSDKQNDSVKARRNGVTTRISSKSLATSQSTPSSSAISSECMYDDSPMSTSCTSESPPLPSTNNVMVEATEERNVFKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLNGVTRCSSGSYPSANMWKNVYATPLRTSYQKRYTLEDK 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00345 429 ProSiteProfiles IQ motif profile. 87 115 IPR000048 GO:0005515
Cca11g00345 429 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 428 - -
Cca11g00345 429 MobiDBLite consensus disorder prediction 204 219 - -
Cca11g00345 429 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Cca11g00345 429 SMART iq_5 109 130 IPR000048 GO:0005515
Cca11g00345 429 SMART iq_5 86 108 IPR000048 GO:0005515
Cca11g00345 429 Pfam IQ calmodulin-binding motif 89 108 IPR000048 GO:0005515
Cca11g00345 429 Pfam IQ calmodulin-binding motif 111 128 IPR000048 GO:0005515
Cca11g00345 429 MobiDBLite consensus disorder prediction 148 170 - -
Cca11g00345 429 Gene3D - 84 140 - -
Cca11g00345 429 MobiDBLite consensus disorder prediction 276 342 - -
Cca11g00345 429 MobiDBLite consensus disorder prediction 189 223 - -
Cca11g00345 429 PANTHER IQ-DOMAIN 5-RELATED 1 428 - -
Cca11g00345 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 129 IPR027417 -
Cca11g00345 429 MobiDBLite consensus disorder prediction 189 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00345 Cca-Chr11 4468620 4471523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00345 1 412 IQD Protein Family AT1G72670 45.012 1.14e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00345 - - gmx:100784093 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00280 10 3039295 3041767 Cca11g00345 11 4468620 4471523 PCT