Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00344 ATGGGCCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGTTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCGCAACTTTTGGACATGGTTGCTGGAGCTCTGTCCCTAAACTTGCAGGCCTTCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCCCTCATTATCGAACTCCACAGTATTTTAGGCAACAGGTGGGCTCAGATAGCCAAACACCTACCAGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAAATACTTGCTCATGATGCTATTCCACCTTTGGCCACATTTTCTGATTTTCACAGCCAAGGCAATATTGGTTCCATGGAAAGTTTATTCCCTTTTACTGCTACAAACCCTAATGTGATCCTAAACTTTCATCATCACCCTGACCAGCTCTACGTTCCCACACCATCCCCAATCCTACAAGGTCTTGATCATAGCAATGATATCAAGTTTGACATTAACAATTACAATGCTAATTTCCTTCATATTCAGAATCCAATACCAGAAATAGTTCTTCCATCGTCTTATGAAGATACATGGTCATTGGGTTATGTACCTCTACATCTCAATCCAACTCAAGAAAATCAAATCTCCAAAAGTGACACCACCTCATATTATGTTGTTGACAAATTCATCAACCCAACTCCATTGCAGCAATACGATCCATGTCACTCAGTAGAACCAACTGAGCCAAAATTAGTCAGTGAGAGCATTGAGGACTATGTTTGTACCATCCCATACTCATCTGCTTCACAGGAGCAACATGATGCCACAGCAAAATTTCAGTATTATCCACAAGATCTAGCAGTGGCAGCGAATCAATTAGAGAACAACATTGATGCCTTCGTGTCTTCACTGCCATCTTCAACAACTTCATCGGTATCAAGCAGCCAAATAGTCAAAAACCCTATTATTCCTTCAGGATGGGAGGCTTGA 1035 0.4087 MGHHSCCNKQKVKRGLWSPEEDEKLINYIATFGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKILAHDAIPPLATFSDFHSQGNIGSMESLFPFTATNPNVILNFHHHPDQLYVPTPSPILQGLDHSNDIKFDINNYNANFLHIQNPIPEIVLPSSYEDTWSLGYVPLHLNPTQENQISKSDTTSYYVVDKFINPTPLQQYDPCHSVEPTEPKLVSESIEDYVCTIPYSSASQEQHDATAKFQYYPQDLAVAANQLENNIDAFVSSLPSSTTSSVSSSQIVKNPIIPSGWEA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00344 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca11g00344 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca11g00344 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca11g00344 344 SMART sant 66 114 IPR001005 -
Cca11g00344 344 SMART sant 13 63 IPR001005 -
Cca11g00344 344 CDD SANT 17 61 IPR001005 -
Cca11g00344 344 Gene3D - 69 116 - -
Cca11g00344 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca11g00344 344 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Cca11g00344 344 PANTHER MYB DOMAIN PROTEIN 55 2 336 - -
Cca11g00344 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca11g00344 344 Gene3D - 11 67 - -
Cca11g00344 344 CDD SANT 69 109 IPR001005 -
Cca11g00344 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca11g00344 344 PANTHER TRANSCRIPTION FACTOR MYB26 2 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00344 Cca-Chr11 4451775 4453467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00344 1 188 MYB Transcription Factor Family AT3G13890 64.251 5.64e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g00344 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00344 K09422 - gmx:100785147 537.339