Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00333 ATGGAGATGAAAGGTTTTATGCTTAACCAGCAACAGCAGCAACAAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGTAATAGAACTGAACTTGGAACCAGTACTTACCCTCAACAATACTTGGCTCCACCACCAACTCAGACTCAACCAGCAAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGATCAGAACCTTCAACTGCATAGAAGAGGCCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAACCAACCTGTGTGCACCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTTATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATGGGTGCAGGCACAGGCAACAACACACTTCTTCCCCCACAGCCACAACCTTCAACCTCTCATCACATAACCCAATTCAACCCCCAAGATCACATGCATGCCTTCCCATTGAAAAAAGAGCAACAAGGTTTCAATGTTAGGCCAGAAATCCTACCCCCTTGGCTTGGTCCACCAATAACAGTAGATCATGATCATGATCATCTCTCATCCTCATCCATAATGTTCTCTCCTTCTCCACACCAAGAAAACCCTAACCCTAGCCTTGGTCCCACTCTTGCTGGGTACCAAACAGTCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTGAGATGGGTGCAACCATGACAAGGCCCCACCATCATGCTCACGTGTCTTCTTCTGCTGCTAATAACTTTGGCTTCAACTTGTCCTCACGTGAAGATaccaccaccaccaccaccaccacaacctcaacaacaaccacTGCAACACTGTTTAACCATGGATTATTATCATCACATAAAgctgctgctgctgctgctttgtcttctgctCCATCCCTTCTTCATGATGTCATCAACTCTTTCTCTTCTCCTTCTGCCTTTGAAGGAACCCCTTTTGAGGATGTTGCCTTTGGTGGCATTAAGAAAgatgctgatgccgatgatgatgatAACAACAACTTGTATTTGCATGACACATTCTCCAAAACAAGTGGTGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTCAGGCCTCTCTCTCATTCTGATATTCTCACCATTGCTGGCATTGGAAACTGCATCCATGATCAGCAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1515 0.433 MEMKGFMLNQQQQQQVVEENMSNLTSASGEASASSGNRTELGTSTYPQQYLAPPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMGAGTGNNTLLPPQPQPSTSHHITQFNPQDHMHAFPLKKEQQGFNVRPEILPPWLGPPITVDHDHDHLSSSSIMFSPSPHQENPNPSLGPTLAGYQTVPHMSATALLQKAAEMGATMTRPHHHAHVSSSAANNFGFNLSSREDTTTTTTTTTSTTTTATLFNHGLLSSHKAAAAAALSSAPSLLHDVINSFSSPSAFEGTPFEDVAFGGIKKDADADDDDNNNLYLHDTFSKTSGAGNEGLTRDFLGLRPLSHSDILTIAGIGNCIHDQQNQSQKPWQG 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00333 504 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Cca11g00333 504 SMART c2h2final6 167 187 IPR013087 -
Cca11g00333 504 SMART c2h2final6 132 162 IPR013087 -
Cca11g00333 504 SMART c2h2final6 91 113 IPR013087 -
Cca11g00333 504 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Cca11g00333 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Cca11g00333 504 MobiDBLite consensus disorder prediction 1 64 - -
Cca11g00333 504 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 23 489 - -
Cca11g00333 504 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Cca11g00333 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 489 - -
Cca11g00333 504 Gene3D Classic Zinc Finger 145 225 - -
Cca11g00333 504 MobiDBLite consensus disorder prediction 1 76 - -
Cca11g00333 504 Gene3D Classic Zinc Finger 72 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00333 Cca-Chr11 4322236 4325597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00333 1 491 IDZ Gene Family AT1G55110 49.507 5.22e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g00333 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00333 K25870 - gmx:100785687 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00268 10 2946760 2950391 Cca11g00333 11 4322236 4325597 PCT