Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00330 ATGCAGCCGAAATCTCACACCCCTCTTTTTGTTCCACCCCAAAAAGCCATGAACAGAATCTCATCATCAAGAAATGGCAACAGCACAACGCAGGCATGTGCTGCATGCAAATACCAACGTAGAAAGTGTGCACCTGATTGCATTCTAGCACCCTATTTCCCCCACGATCGCCAACGCCAATTCCTCAACGCACACAAACTATTTGGCGTCAGCAACATCACCAAAATCATCAAGTTCCTCACCCCTCACGACAAGGACCAAGCCATGCGCACCATCATATACCAATCCGACATGCGTGCCTCCGACCCTGTCGGAGGCTGCTACAGGTACATTCTCGACCTCCAGGCCCAGATCGAGTACTACCGGGCCGAGCTCGAACTCGCCCTTCAGCAGCTCGCCATCTTCCGAGCCCAGGACCAGGCCCAGCACCAACAACACGCCGGTATCTATGCTGCAAACAGCAACGTTAACGTTGCTGTCAATGGCGATGGTGAGGTTTTGAACGCTGATCCGTTAGGGTTGTATAACCAGCCACAGCATCATCAGTATCAGTGTCTGCCACTGCAGGAGCAGTATGTTATGGTGCATGAGAATGTTCATGGAAGCCAGAACAGCAACTCCAACACCCCTTTGCAGGAACAGATTAACACGTGGGCTGTGCAGAACACTGCGGTGTCGCTTTCATCGTTGTCGTTGCAAGGGCAAAGTAGTAATGTTAGCGATGAGTATGATCTCAAGCCCGGGGTCATTGACTTGGATTCTGATGAGAGAAGTGAGTTAGGATTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAAGCAGTCTTGTTTAAGATAGATGATGCAGTAATAAAAGCGGAGGCTGACTCATTCAACAAGCTCAAGATTATGACCTGA 897 0.4983 MQPKSHTPLFVPPQKAMNRISSSRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKFLTPHDKDQAMRTIIYQSDMRASDPVGGCYRYILDLQAQIEYYRAELELALQQLAIFRAQDQAQHQQHAGIYAANSNVNVAVNGDGEVLNADPLGLYNQPQHHQYQCLPLQEQYVMVHENVHGSQNSNSNTPLQEQINTWAVQNTAVSLSSLSLQGQSSNVSDEYDLKPGVIDLDSDERSELGFESEELVHRSDEAVLFKIDDAVIKAEADSFNKLKIMT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00330 298 Pfam Lateral organ boundaries (LOB) domain 32 128 IPR004883 -
Cca11g00330 298 Coils Coil 111 131 - -
Cca11g00330 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 26 246 - -
Cca11g00330 298 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Cca11g00330 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00330 Cca-Chr11 4289023 4290807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00330 31 266 AS2 family AT3G13850 48.729 1.80e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca11g00330 LOB 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00330 - - pvu:PHAVU_010G138500g 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00330 11 4289023 4290807 Cca11g00330 11 4289023 4290807 ECH