Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00328 ATGgcttctacttgttcctctctcttagttcttaccaaaaagtatgatgttttcataagctttagaggaaaggatactcgctgtgacttcgcaagccatcttcatgctgctctctgcagaaacaacatggaaacctacatagactacagaatccaaaaaggagaagaggtttgggtggaactgctgaaagccatcaaagactccactctctttttggttatcttctcagagaactatgcttcttctagttggtgcttgaatgaactggtggaacttatggaatgcaagaaacaacaagaagatgacgttcatgttattcctgtgttctacaaaatagacccatctcaggttcgcaaacagagtgggagttatcaagcggcaatcacaaaccaaaaatggagAAACGCTCTCTCTGCTGCAGCAAATTTATCTGGCTTCCATTCTCACGTATACAGgaacgattctgatttgattgaagacattatcaaagttgttttgcaaaaattaaatcacaagtacacaaatgactttcgaggccttttcatatctgatcaaaactatagaaacgttgaatctttactgagaattgattcaaaggaagttcgagtaattggaatttggggcatgggaggtattggtaaaacaacacttgctgctgccatttttcataaggtttcttctcactatgaaggcacttgcttcttagaaaatgtggcagaggaaacaaaaaggcatggactacattatgtatgcaataaacttctttccaagttactaagggaagatcttcatgttgacacttgtaaagtgataccctctattgttgcaacaagactcagacgtaaaagagttttcatcgtactagatgatgtcgatacttcagatcttcttgaaaatttggtcggaaaaggtcgtgactggctaggagctggtagcagagtcattttgacaaccagagataagcatttacttacacatgaagatgttgacataattcatgaagtcaaggaaatgaactttcaaaactcccttaaacttttcagcttaaatgcctttggtaaaacctgtcctaaaaaggaatatgaggagttgtcaaaaagagcaacgatttatgccaaaggaatccctttagctttgaaagttttgggatcatttcttcgttccaaaagtgaaaatgaatgggatagtgcactaagtaaattaaagaaaactcccaatgcagaaattcaggcagtgctgagattgagctatgatgggttagatgatgatgagaaaaacatttttctagacatagcttgtttttttaaaggacaagaaagagatcatataacaaaaatattaaatgcttgtggtttttctgcaaatataggaataagaagccttttagacaaagctcttgttaccatttcaggaaataatttcatagatatgcacgacttgatgcaagaaatgggcaaacaaattgttcgtgaagaatctattaaaaatcctggtcaacgcagtagattgtgggatcctaaagaagtctatgatgtattgacatataatagaggaactagtgcagttgaaggaatatggttagatatggctcaaattacaaatataaacttaagctccagagcattcaaaaagatgccaaatctgagattacttgttttccaatcactcaaaagagggtttgagagaatcaattcagtgtaccttccaaagggccttgaattcttacctaaaaacttgagatattttggttggaatggatatccattagaatctctaccatcaactttttgtcccgagaatcttgttgagctttccatgcaatatagcaatgtggaaaagctttggcatggagtacagAATTTGCCAAATTTAGAGAAAATTGACCTTTGTGGCTCAAAACACCTTATGGAGTGTCCAAATTTGTCTCTTGCTCCAAATCTTAAATTTGTAAGAATAAACAAATGTGAAAGCTTGTCTTATGTTGATCCATCAATTTTGTCCCTCCCAAAGCTAGAATTTTTAAATGTAAGCGAATGCACTTCGCTTACGAGCCTTAGCAGCAACACTTGGTCACAGTCTCTTCGAGAATTGTATTTATATGATTCAGGTTTGAATGAACTGCCCCCATCAGTTTTGCTTATCAAAAATCTCGAAACCTTTTCTTTTTCAATTAACTATGGTTTCGTGGATCTTCCTAAAAACTTTGCTCGTCATATTATGCTTACTGAGTCAAGGAAACATGAATGTGACTCTTTCTTCACCTTACATAAGCTACTTTCTAGTTCGGGCTTCCAATCAATAACAACTCTAATTTTTGTGAGTTGTCATAGCTTCACTGAAATCCCAGATGAAATCTCTTTGTTATCATCATTGCAATACTTTTGCCTACATTATAGTGTCATTATAAGCTTACCTGAAAGCATGAAGTATCTGCCAAGACTCAAACTTCTTGAAGTTGATGAGTGTAACATGCTTCAACGTATACCTGCACTCCCACAATCCATTCAATGCTTTCGTGTTTGGAACTGTCAATCTCTTCAGACTATGTTAA 2551 0.1078 MASTCSSLLVLTKKYDVFISFRGKDTRCDFASHLHAALCRNNMETYIDYRIQKGEEVWVELLKAIKDSTLFLVIFSENYASSSWCLNELVELMECKKQQEDDVHVIPVFYKIDPSQVRKQSGSYQAAITNQKWRNALSAAANLSGFHSHVYRNDSDLIEDIIKVVLQKLNHKYTNDFRGLFISDQNYRNVESLLRIDSKEVRVIGIWGMGGIGKTTLAAAIFHKVSSHYEGTCFLENVAEETKRHGLHYVCNKLLSKLLREDLHVDTCKVIPSIVATRLRRKRVFIVLDDVDTSDLLENLVGKGRDWLGAGSRVILTTRDKHLLTHEDVDIIHEVKEMNFQNSLKLFSLNAFGKTCPKKEYEELSKRATIYAKGIPLALKVLGSFLRSKSENEWDSALSKLKKTPNAEIQAVLRLSYDGLDDDEKNIFLDIACFFKGQERDHITKILNACGFSANIGIRSLLDKALVTISGNNFIDMHDLMQEMGKQIVREESIKNPGQRSRLWDPKEVYDVLTYNRGTSAVEGIWLDMAQITNINLSSRAFKKMPNLRLLVFQSLKRGFERINSVYLPKGLEFLPKNLRYFGWNGYPLESLPSTFCPENLVELSMQYSNVEKLWHGVQNLPNLEKIDLCGSKHLMECPNLSLAPNLKFVRINKCESLSYVDPSILSLPKLEFLNVSECTSLTSLSSNTWSQSLRELYLYDSGLNELPPSVLLIKNLETFSFSINYGFVDLPKNFARHIMLTESRKHECDSFFTLHKLLSSSGFQSITTLIFVSCHSFTEIPDEISLLSSLQYFCLHYSVIISLPESMKYLPRLKLLEVDECNMLQRIPALPQSIQCFRVWNCQSLQTML 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00328 850 Pfam TIR domain 14 175 IPR000157 GO:0007165
Cca11g00328 850 PRINTS Disease resistance protein signature 372 386 - -
Cca11g00328 850 PRINTS Disease resistance protein signature 619 635 - -
Cca11g00328 850 PRINTS Disease resistance protein signature 278 292 - -
Cca11g00328 850 PRINTS Disease resistance protein signature 203 218 - -
Cca11g00328 850 Gene3D - 172 332 IPR027417 -
Cca11g00328 850 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 701 IPR044974 GO:0006952
Cca11g00328 850 Gene3D - 338 421 IPR042197 -
Cca11g00328 850 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 701 - -
Cca11g00328 850 SUPERFAMILY L domain-like 526 846 - -
Cca11g00328 850 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Cca11g00328 850 SMART till_3 14 143 IPR000157 GO:0007165
Cca11g00328 850 Pfam Leucine Rich Repeat 600 619 IPR011713 -
Cca11g00328 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 431 IPR027417 -
Cca11g00328 850 Pfam NB-ARC domain 191 411 IPR002182 GO:0043531
Cca11g00328 850 Gene3D Ribonuclease Inhibitor 692 850 IPR032675 -
Cca11g00328 850 Gene3D Ribonuclease Inhibitor 513 691 IPR032675 -
Cca11g00328 850 Gene3D - 11 171 IPR035897 -
Cca11g00328 850 ProSiteProfiles TIR domain profile. 13 169 IPR000157 GO:0007165
Cca11g00328 850 SUPERFAMILY "Winged helix" DNA-binding domain 408 513 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00328 Cca-Chr11 4268746 4273483 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00328 12 820 WRKY Transcription Factor Family AT4G12020 32.349 3.47e-115 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00328 - - gmx:100805490 1299.26