Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00326 ATGACTAAGACTTGTACTTGTTCCTCAGTCTCAGCTGTTACAAAAAAAtacgatgttttcatcagctttagaggagaggacactcgctgtgacttcaccagccatctttatgctgctctccgcacaaacaacatggaaacctacatagactacagaatccagaaaggagaagatctttgggtggaactgctgaaagccatcaaagactccactctctttttggttatcttctcagagaactacgcgtcttcaagttggtgcttgaatgaacttgtggaactgatggaatgcaagaaacaacaacaagaagacgttcatgttattcctgtgttctataagatagacccttctcaggtacgtaaacagagagggagttaccatgcagcattcgcaaagcacaagaaggataagaaggtgagtaaggagaagatgcaaaagtggaaggacactctcgttcatgcagccaatttatcaggctTCCATTCTCACAAATACAGgactgaatctgacttgattgaacacattatcaaagttatttccgaaaaactaaatcacaagcccacaactgattttagaggtcgtttcatatctgatgaaaactacacaaacattaaatctttattgaaaattaattcggaggaagttatagtcattggaatttggggcatgggaggtatcggtaaaacaacacttgctactgctgttttccaaaaggtttcttgtcagtatgaaggcacttgcttcttaaaaagtgtggcagaggagtccaaaaggcatggaccaaattacatatgcaacaaagttttttctaagttgttacaggaagatatctgtattgacactcctacactgataccctctattgttaaaaaaaggctcagaagaaagaaagttttcattgtactagatgatgtcaattcttcagaacttgttgaaaatttaattggagtggatcgtgactggctaggagctggtagcagagtcattgtgacaaccagagataaacacgtgcttataagtggagatgttgacaaaattcatcaagtcaaggaaatgaactttcaaaactcccttgaacttttcagctcatatgcctttcgcaaaacccatcctacgaaggaatatatggagttatcaataagagcaatagagtatgccaaaggaatcccgttagctttgaaagttttgggatcataccttcgttccaaaagtgaaaatgaatgggatagtgcactaaataaattgaagaaaattcctaatgtggaaattgaggaagtgttgagattgagttatgatggattagatgatgatgagaaaaatattttccttgacatagcttgtttcttcaaaggacaaaaaagagaccatataacaaaattattaaatgcttgtgatttttctgcagatatagggataaggcgtcttttagacaaagctcttattgttactactccatacaataattgcatagatatgcaagatatgatacaagaaatgggtagaagaattgttcgtgaaaaatctattcaaagtcatgggcaatgtagtagattgtgggatcctaaggaagtctataatgtattgacaaataatagaggaaatcatgaaattgaaggaatatggttagatatgactcaaattacaaatataaatttaagctctggagtattcaaagagatgccaaacctgagattacttgtttttcgatccctcaatggagattcaaagagaatcaattcaatataccttccaaagggtcttgaattcttacctaataacttaagatatttagtgtggaacaggtaccctttagaatctctaccatcaactttttgccctgacaatctttttgagatttccatgcgacatagcaatgtggaaagactttggcatggagtacagAATTTTCCAAATTTAGAGATAATTAACCTTTCTGGCTCCAAACACCTTGTGGAGTGTCCAAATCTGTCTCGTGCCCCAAAACTTAGTCATGTACGAATGAGTAGATGTGAAAGCTTAACTTATGTTGATCCATCAATTTTGTCCCTCCCAAAGCTTGAAATTTTGAATTTAACCGAGTGCACATCACTTAAGACACTTGGCAGCAACATTTGTTCACAATTTCTTCGAGGATTGTTTTTAGGACTATCAGGTTTGAGTGAATTTCCCCCATCAATTTTGCTTATAAAAAATCTCAAAGCCTTTTCTTTCACAATTAGTTATGGTCTTGTGGATCTTCCTGAAAACTTTTCTCAACAAATTGTGCTTTATGAGTCAAGGAAACACAAAGGTGACACTTTCTTGATCTTACAAAAGGCATTTCTTTGCCCTGGCTTTCAGTCACTAACAGGTATAGTATTTGAGGATTGTCTAAGCTTGTGTGCAACTGCAATCCCAAACAACATCTCCATGTTATCATCATTGCAATACTTAACCTTTTATTGTTGCGCCATCACAAGCTTACCTGAGAGCATCAAGCATCTGACAAGACTCAAAGTTGTTGAAGTTTGTGAATGCAAAATGCTTCAATGTATACCTGCACTTCCACAATCCATTCAACACTTACACATTTGGAGGTGCCAATCTCTTCAGAGAGTGTTATGTTCCACAATTGAACCATTTAAAACACCTGAACGTATTTTTCTGCTTCCTAACTGCTTAACATTGGATGATCATTCATATGATGCAATTTTGAATGATGCCATTGTTATGATTAAACTTGCAACAGAAACAACATCGGCAGTTGTATCAGAAAATAAAGAAGATACATCCATGAATAATTATTTATGTGAATCAACAAAGATTTGTTATTCTTTACCAGCTAGAAGTGGAAAATTTCTAGATTGGTTTCATCACCACTCTACACAGGTTTTGGTCCCTATTGAACAACTTCCACCTGATTTTTTGGGTTTCATTTTCTATTTGGTTGTTTCTCCAATCCAATCACGCCACATTGGATGTTGTGGAAGTATTGGATGTGAATGCTACTTGGAAACTAGTTGGGATGAAAGGATCAATATAACAAGTTTCTTTTTAAATGAAACTGTTATGCTTTCTCATCCACCTCCATTTAAATTTATGACAGATCACATATTTTTATGGTATGATGCACGACTTTGCAAGAAAATAGTGGAAGTAATTAAAGAGAGGAAAGCTATTAATAGTGGTGATCCAAAGCTTACATTTAAATTTTTTGTTCAATCCCAACATAATGAGGAAGCAATGATCATAAAAGATAGTTGGGTTCGTTGGATTGATTCCTCAGAAGAAATTGGGGACGTAAATATAAAAGAAATAGGGAAATTCATGAAGTAA 3315 0.1578 MTKTCTCSSVSAVTKKYDVFISFRGEDTRCDFTSHLYAALRTNNMETYIDYRIQKGEDLWVELLKAIKDSTLFLVIFSENYASSSWCLNELVELMECKKQQQEDVHVIPVFYKIDPSQVRKQRGSYHAAFAKHKKDKKVSKEKMQKWKDTLVHAANLSGFHSHKYRTESDLIEHIIKVISEKLNHKPTTDFRGRFISDENYTNIKSLLKINSEEVIVIGIWGMGGIGKTTLATAVFQKVSCQYEGTCFLKSVAEESKRHGPNYICNKVFSKLLQEDICIDTPTLIPSIVKKRLRRKKVFIVLDDVNSSELVENLIGVDRDWLGAGSRVIVTTRDKHVLISGDVDKIHQVKEMNFQNSLELFSSYAFRKTHPTKEYMELSIRAIEYAKGIPLALKVLGSYLRSKSENEWDSALNKLKKIPNVEIEEVLRLSYDGLDDDEKNIFLDIACFFKGQKRDHITKLLNACDFSADIGIRRLLDKALIVTTPYNNCIDMQDMIQEMGRRIVREKSIQSHGQCSRLWDPKEVYNVLTNNRGNHEIEGIWLDMTQITNINLSSGVFKEMPNLRLLVFRSLNGDSKRINSIYLPKGLEFLPNNLRYLVWNRYPLESLPSTFCPDNLFEISMRHSNVERLWHGVQNFPNLEIINLSGSKHLVECPNLSRAPKLSHVRMSRCESLTYVDPSILSLPKLEILNLTECTSLKTLGSNICSQFLRGLFLGLSGLSEFPPSILLIKNLKAFSFTISYGLVDLPENFSQQIVLYESRKHKGDTFLILQKAFLCPGFQSLTGIVFEDCLSLCATAIPNNISMLSSLQYLTFYCCAITSLPESIKHLTRLKVVEVCECKMLQCIPALPQSIQHLHIWRCQSLQRVLCSTIEPFKTPERIFLLPNCLTLDDHSYDAILNDAIVMIKLATETTSAVVSENKEDTSMNNYLCESTKICYSLPARSGKFLDWFHHHSTQVLVPIEQLPPDFLGFIFYLVVSPIQSRHIGCCGSIGCECYLETSWDERINITSFFLNETVMLSHPPPFKFMTDHIFLWYDARLCKKIVEVIKERKAINSGDPKLTFKFFVQSQHNEEAMIIKDSWVRWIDSSEEIGDVNIKEIGKFMK 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00326 1104 Gene3D - 352 435 IPR042197 -
Cca11g00326 1104 Gene3D - 13 180 IPR035897 -
Cca11g00326 1104 Pfam Leucine Rich Repeat 615 634 IPR011713 -
Cca11g00326 1104 SUPERFAMILY L domain-like 541 880 - -
Cca11g00326 1104 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Cca11g00326 1104 Gene3D Ribonuclease Inhibitor 527 707 IPR032675 -
Cca11g00326 1104 Gene3D Ribonuclease Inhibitor 708 893 IPR032675 -
Cca11g00326 1104 Gene3D - 181 346 IPR027417 -
Cca11g00326 1104 PRINTS Disease resistance protein signature 217 232 - -
Cca11g00326 1104 PRINTS Disease resistance protein signature 292 306 - -
Cca11g00326 1104 PRINTS Disease resistance protein signature 386 400 - -
Cca11g00326 1104 PRINTS Disease resistance protein signature 681 697 - -
Cca11g00326 1104 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Cca11g00326 1104 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Cca11g00326 1104 SMART till_3 16 157 IPR000157 GO:0007165
Cca11g00326 1104 Pfam NB-ARC domain 204 427 IPR002182 GO:0043531
Cca11g00326 1104 Pfam TIR domain 16 189 IPR000157 GO:0007165
Cca11g00326 1104 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 712 - -
Cca11g00326 1104 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 712 IPR044974 GO:0006952
Cca11g00326 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00326 Cca-Chr11 4248233 4253958 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00326 14 831 WRKY Transcription Factor Family AT4G12020 30.852 4.50e-98 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00326 - - gmx:100805490 1447.95