Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00324 ATGGGGCTAAAGCTGATTTTTCTGCTGTTTAAGCTGCATTTAGTTGTCAGCACTCAGCAGTTGCATGAACATGCAGCCACCAAGCTACTACATTCCAGTGACAGAAGCCATTTTAAAATTGCAATCCCACCATCAAAGTCATCTTCTGAAGTTCATTCAAGTATTGCACAACCACCATCTGAGTCATCTTCTGGTGTACCTGCAAGTATTGCATTTTCACCTTCCAAATCAATTCACAAAGCTCCTACAGTTATATGGACACATGGTTCTGTGGATTCTCCTGTATCACATCATAAGCATCACCATTCCAAAAGAAAGTTCCGCAATCCAACTCCAGCACCAACCTACCCAGTTCAGGCTCCTACATACAGTCATCAAGGTCCTTCAAACTTATCACAGCCTCCTTTCTCTTCATCAAATATAAAGGATATTCGTGCCCCTGCACCTGCACCATCACCAACAGATCTGCCCGACCACGTGGATGTACCCTCTTCTTCACCTAGAATTTCTCCTCTAGGTTCATCATTGAAGAAGGAAAAGGCTCCACCTCCAGCATATGCATTGGTTCTGCCACCTCCACCTCCTAATAAAGATTGCTTGTCGCTGACTTGCTCAGAGCCCTTAACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTCCATATCAACATTGCAATATACAAGTTTTTTCCTTTGGTTTCACAGCTAGCCAAGGAAATTGCAGCAAGTGTTCTGCTGAAACATACCCAGGTTCGCATTGTGGGAGCTGATGCAGCTAGTCAGCAACTAGAGAAAACCACTGTTCTGATAGACTTAGTACCCAAAGGAGTAAAATTTGATGATACCACCGCATTTTTAATATATAAGAAATTCTGGCACAGGGAGATTCTGATAGATGCTTCAGTCTTTGGTGCTTATGAAGTACTCTATGTTCATTACCCAGGTCTTCCACCATCTCCACCTTCAACACCCTCAGATGCCTCTAGTATAGATGATGGGCCAAATCCTGGACATGACAACAATGGAATGATGTTGAAACCTTTAGGAGTAGATGTCTCAAAGAAGAAAAAAGAAGGGAGCAATGGAAGAATAATTCTTATAATTGTGTTGTCATCCATTACTGCTTTAGTTTTATTCATTGGTCTTGCTTGGCTTTGTCTGCTGAAATGTCGTGCCTATGTTCATGAACATGAATCAGCTCCGGATGGTTTAATTTCCTCCTCTTCAAAACAATCAAGGCCTGCTGGGTCATTGGCTCATGGGACCAGGCCAAGTTCTGGATCACGGTCCTTCAACTTTGGAACAATAACATATACAGGGTCTGCTAAGATTTTTACTTTGAATGACTTAGAGAAGGCAACAAATAACTTTGATTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGAGTTGTTTACAAAGGCATTCTAAATGATGGGAGGGATGTAGCTGTGAAGATCCTCAAAAGAGATGATCATCGCGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTACACCATAGAAATTTAGTTAAATTGATAGGTATATGCATTGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGAAGTGTGGAATCCCACTTACATGGAGCTGACAAGGAAACTGATCCACTGGATTGGAATTCCCGGATGAAGATTGCTCTTGGTGCAGCTCGGGGATTGGCCTATTTGCATGAAGATTCAAATCCATGTGTCATACATCGAGACTTCAAGGCCAGCAACATCTTGTTGGAGTGTGATTTTACACCCAAAGTCTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGAAAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTCCTAACCGGAAGAAAGCCTGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTTGTTACTTGGGCTCGTCCACTTCTCACAAGTAAGGAGGGTTTGCAGATGATAATAGACCCATTTGTAAAGCCTAACATTTCTGTTGATACTGTGGTAAAAGTTGCTGCAATTGCATCCATGTGTGTGCAACCAGAAGTCTCTCAACGTCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAGCTAGTATGCAGTGAGTTTGAAGAAACAGACTATATAAGATCAAAGAGTTTTCAAGAAGAGGGTCTTCTAACTGATGTGGAAGGAAGGTTTTCTGAAGCTTCAGGTGAAAGAGTGGAATTTTCGGAGTATCAAAAAACTCTCTCTGGCTATCAATCTGGTGAAGAAAAGGTAACATTATCTGCATCAGAGTTGCTTGGTACTTCAGGTCAGGAATTTGAGTCATTCAGGAGGTATTCTCGTTCGGGACCTCTAACTATTGGGAAGAAAAGACAGTTCTGGCAGAAGTTGAGAAGTTTGTCTCGAGGTAGCTCCAGTGAACATGGATTTTCAACTAAACTATGGCCTGGATCCCATTAA 2571 0.424 MGLKLIFLLFKLHLVVSTQQLHEHAATKLLHSSDRSHFKIAIPPSKSSSEVHSSIAQPPSESSSGVPASIAFSPSKSIHKAPTVIWTHGSVDSPVSHHKHHHSKRKFRNPTPAPTYPVQAPTYSHQGPSNLSQPPFSSSNIKDIRAPAPAPSPTDLPDHVDVPSSSPRISPLGSSLKKEKAPPPAYALVLPPPPPNKDCLSLTCSEPLTYTPPGSPCGCVWPLQVKLHINIAIYKFFPLVSQLAKEIAASVLLKHTQVRIVGADAASQQLEKTTVLIDLVPKGVKFDDTTAFLIYKKFWHREILIDASVFGAYEVLYVHYPGLPPSPPSTPSDASSIDDGPNPGHDNNGMMLKPLGVDVSKKKKEGSNGRIILIIVLSSITALVLFIGLAWLCLLKCRAYVHEHESAPDGLISSSSKQSRPAGSLAHGTRPSSGSRSFNFGTITYTGSAKIFTLNDLEKATNNFDSSRILGEGGFGVVYKGILNDGRDVAVKILKRDDHRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSVESHLHGADKETDPLDWNSRMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLECDFTPKVSDFGLARTALDEKNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWARPLLTSKEGLQMIIDPFVKPNISVDTVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFEETDYIRSKSFQEEGLLTDVEGRFSEASGERVEFSEYQKTLSGYQSGEEKVTLSASELLGTSGQEFESFRRYSRSGPLTIGKKRQFWQKLRSLSRGSSSEHGFSTKLWPGSH 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00324 856 MobiDBLite consensus disorder prediction 118 140 - -
Cca11g00324 856 MobiDBLite consensus disorder prediction 40 68 - -
Cca11g00324 856 SUPERFAMILY Protein kinase-like (PK-like) 444 737 IPR011009 -
Cca11g00324 856 PANTHER OS01G0750732 PROTEIN 8 855 - -
Cca11g00324 856 ProSitePatterns Protein kinases ATP-binding region signature. 470 492 IPR017441 GO:0005524
Cca11g00324 856 Pfam Protein tyrosine and serine/threonine kinase 467 737 IPR001245 GO:0004672|GO:0006468
Cca11g00324 856 CDD STKc_IRAK 470 738 - -
Cca11g00324 856 MobiDBLite consensus disorder prediction 89 180 - -
Cca11g00324 856 MobiDBLite consensus disorder prediction 327 352 - -
Cca11g00324 856 PANTHER OS01G0750732 PROTEIN 8 855 - -
Cca11g00324 856 Gene3D Phosphorylase Kinase; domain 1 439 539 - -
Cca11g00324 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Cca11g00324 856 MobiDBLite consensus disorder prediction 408 433 - -
Cca11g00324 856 ProSiteProfiles Protein kinase domain profile. 464 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00324 856 MobiDBLite consensus disorder prediction 42 68 - -
Cca11g00324 856 MobiDBLite consensus disorder prediction 409 433 - -
Cca11g00324 856 Gene3D Transferase(Phosphotransferase) domain 1 540 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00324 Cca-Chr11 4209569 4214856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00324 196 851 Receptor kinase-like Gene Family AT5G56890 58.333 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Cca11g00324 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00324 - - gmx:100814040 1449.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00262 10 2855136 2859842 Cca11g00324 11 4209569 4214856 PCT