Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00317 ATGAGCCGCTACGATAGCCGCTCCGGCGACCCCGCTTCCTACCGCGACCGGAGAAGTGATTCTGGGCTAGGTGGACCTACAGGTTTTGGGGGTTCTGTTCAACACTCTTCATCAAACAGGAAGGATTATGATGGTGGTGCGTCGCCAAGGAACCTCAGTTTGGATGGTTTACCTCATTTTGAGAAAAATTTCTACATTGAGTCTTCAGCAGTAAGGGCAATGACAGATGCTGAGGTTAATGAGTACCGGCAGCTGAGGGAAATAACTGTTGAAGGTCGAGATGTCCCTAAACCTGTCAAGACCTTTCATGATGCTGGTTTTCCAGAATATGTAATGCAAGAAATTGCAAAAGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCAATGGCATTGAAGGGACGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTTCATGTTAATGCTCAGCCAATTCTAGATCATGGAGATGGACCAATTGTGTTAATTTTGGCTCCAACTCGTGAACTTGCTGTGCAAATACAACAAGAGGCTACTAAATTTGGTGCGTCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCTGGGAGGTTAATTGATATGCTCGAGTCAAATCATACTAACTTGCAGAGGGTCACATACCTTGTGTTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTTCGGAAGATTGTCTCTCAGATTCGTCCGGACCGTCAGACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGAAAGTTTCTTTATAACCCATACAAAGTAATTATAGGTTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAACTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGTCGAATACTGATATTTATGGATACCAAAAAAGGATGTGATCAGATCACTCGGCAGCTCCGCATGGATGGCTGGCCTGCACTCTCAATTCACGGAGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTCTCAGAATTTAAATCGGGCAAAAGTCCTATTATGACCGCAACAGATGTTGCAGCTCGTGGATTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGGTCACTTGAGGACTATGTTCATCGCATTGGCCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAGCCATACTTGAGGAAGCTGGACAGAAAGTTAGTCCTGAACTAGCAGCAATGGGACGTGGTGCACCACCTCCACCTTCGGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTAA 1521 0.455 MSRYDSRSGDPASYRDRRSDSGLGGPTGFGGSVQHSSSNRKDYDGGASPRNLSLDGLPHFEKNFYIESSAVRAMTDAEVNEYRQLREITVEGRDVPKPVKTFHDAGFPEYVMQEIAKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDHGDGPIVLILAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPPPSGPRGFQDRGRGYGSSRPWS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00317 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 100 128 IPR014014 GO:0003724
Cca11g00317 506 SMART ultradead3 119 322 IPR014001 -
Cca11g00317 506 CDD SF2_C_DEAD 319 449 - -
Cca11g00317 506 Gene3D - 308 480 IPR027417 -
Cca11g00317 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 479 IPR001650 -
Cca11g00317 506 MobiDBLite consensus disorder prediction 1 50 - -
Cca11g00317 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 252 260 IPR000629 -
Cca11g00317 506 PANTHER LD32873P 53 494 - -
Cca11g00317 506 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 494 - -
Cca11g00317 506 Pfam DEAD/DEAH box helicase 124 295 IPR011545 GO:0003676|GO:0005524
Cca11g00317 506 CDD DEADc_DDX5_DDX17 111 306 - -
Cca11g00317 506 Pfam Helicase conserved C-terminal domain 331 440 IPR001650 -
Cca11g00317 506 MobiDBLite consensus disorder prediction 474 506 - -
Cca11g00317 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 455 IPR027417 -
Cca11g00317 506 MobiDBLite consensus disorder prediction 1 17 - -
Cca11g00317 506 MobiDBLite consensus disorder prediction 30 44 - -
Cca11g00317 506 Gene3D - 63 307 IPR027417 -
Cca11g00317 506 SMART helicmild6 359 440 IPR001650 -
Cca11g00317 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 306 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00317 Cca-Chr11 4058356 4064004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00317 87 460 Eukaryotic Initiation Factors Gene Family AT3G19760 34.133 3.77e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00317 K12823 - gmx:100781619 960.674