Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00314 ATGAATACTTTAGCCTTAAAAGTTATAGAGGAAACTCCTAAACTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCATACTCACCTTTGTTTCGCTTCCATtgtttttcttgttttAGGTTCATATGTACAAATGGAAAGCCTGCATATGTGACTATCAAGATAGATAACCAGAAGTTTGCAAAAACTAGCCAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGATTCAATGTGCTCATCCAGCTGATTCATGCATAACTATTACACTGAAAACATCATGTTCTTCTATATTGGGGAAGTTCCATATCCAGGCTCAGCAGCTACTGAAGAAAGGAGGCTTGATCAATGGATTCTTCCCTCTCCTCATGGACAATGGAAAACCAAACCCAAAACTTCAGTTGAAGTTTCAGTTATTGTTCAAGCCAGCAGAATTGGAACCAAGTTGGGCAAAGATGGTGAACAATGACTGGGAATTTCAAGGGCTGAGGGATGCTACATTTCCACTAAGGTCCAATTGTCAGGTCAAACTTTATCATGATGCTCACCATTCTTCTGCTTTCCAACCTCCCTTTGATCTATGTGGAGCTCCCAAAAAGCTATGGGAGGATATCTATAAAGCCATTGAGGGTGCAAAGTATCTAGTTTATATTGCAGGGTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCCAGAGGGATAAAGTTAGGTGAACTATTGAAGACGAAGGCAGAGGAAGGTGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTGCCCTTTGTTAAGAACAAAGGTGAAATAAACAACCAAGATGAGGAAGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGATTACACCATATGTTCCCCACACTCTTTTCTCACCATCAGAAGACTATAACAGTGGACACAAATGCACCCAAGTCTGTTGGTGACAACAGAGAACTCATGAGCTTTGTAGGAGGCTTAGATGTTTGTGATGGCAGATATGACACAGAGCAACATTCATTGTTTCAAACACTCATAAGGGAATCACATTGTTATGACTTCTACCAACCAAGCATTGAAGGAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACAAATTTTGAGCAAAGATGGACGAAGCAGTGTGATCCATCTTTTCTAGTCCCTTCTAGCACCCTGGTAAATCTTATGCCTAGGACAAGCTCAAGCACTCTTACAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGATCATGTCTCAGTTGGTGACTTGTCCACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAACCAATACTTCATTGGGGGGTGCCATTGGTGGAAGAAAGATAGGCACTGTGGCTGCACTAATCTAATTCCAATTGAAATTGCACTCAAGGTGGTGAGTAAGATCAAAGCAAAGGAGAGATTTTCTGTGTACATAGTGATACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGAGAACCAGGACACCCTAGAGACTACCTGAATTTTTTCTGTCTTGCAAATAGGGAACAGAAGGGTCAAGGGGAGTATCTTCCACCAGATTCTCCCCAACCTGAAACTCAATACTGGAATGCCCAAAAAAATCGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACCTATACATTTTGATAGGATCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCCATAGGATGCTACCAGTCTCAAGATGAAGCTGATACACAAATGAACCTTGATGAAATTCAAGCATACAGAATGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAACTGTTCTTAGAGCCAGAAAGATTGGAGTGTGTGGAGAGAATGCGGTCAATAGGAGATGAAATGTGGGGAATGTACAGCAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAAGTTACCCTGTGAGAGTAACACAAGAAGGGTATGTGAAGGACCTCACTGATGGAGTTCATTTTCCTGATACAAATTCTCTAGTCAAAGGAAAGAGGTCCAAAATGTTGCCCCCTATTTTTACCACTTAA 2328 0.418 MNTLALKVIEETPKLLHGTIEATIFNASPYSPLFRFHCFSCFRFICTNGKPAYVTIKIDNQKFAKTSQESNRVWNQTFQIQCAHPADSCITITLKTSCSSILGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLQLKFQLLFKPAELEPSWAKMVNNDWEFQGLRDATFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDIYKAIEGAKYLVYIAGWSFNPMMVLVRDPHTEIPHARGIKLGELLKTKAEEGVAVRVMLWDDETSLPFVKNKGEINNQDEEAFAYFNHTKVICRKCPRLHHMFPTLFSHHQKTITVDTNAPKSVGDNRELMSFVGGLDVCDGRYDTEQHSLFQTLIRESHCYDFYQPSIEGASLNKGGPRAPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSFLVPSSTLVNLMPRTSSSTLTERNWKVQVYRSIDHVSVGDLSTKSTVERSIHEAYVEAIRRAERFIYIENQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFSVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREQKGQGEYLPPDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDEADTQMNLDEIQAYRMSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWGMYSSEEIVDMEGVHLVSYPVRVTQEGYVKDLTDGVHFPDTNSLVKGKRSKMLPPIFTT 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00314 775 PIRSF PLD_plant 7 775 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca11g00314 775 Pfam Phospholipase D C terminal 693 764 IPR024632 -
Cca11g00314 775 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 621 648 IPR001736 GO:0003824
Cca11g00314 775 PANTHER PHOSPHOLIPASE D 9 775 IPR015679 -
Cca11g00314 775 SUPERFAMILY Phospholipase D/nuclease 445 699 - -
Cca11g00314 775 Pfam PLD-like domain 617 661 IPR025202 -
Cca11g00314 775 Gene3D Endonuclease Chain A 190 443 - -
Cca11g00314 775 Pfam C2 domain 52 125 IPR000008 -
Cca11g00314 775 Gene3D Endonuclease Chain A 461 673 - -
Cca11g00314 775 SMART pld_4 621 648 IPR001736 GO:0003824
Cca11g00314 775 SMART pld_4 312 350 IPR001736 GO:0003824
Cca11g00314 775 Gene3D C2 domain 46 145 IPR035892 -
Cca11g00314 775 SUPERFAMILY Phospholipase D/nuclease 167 423 - -
Cca11g00314 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 142 IPR035892 -
Cca11g00314 775 PANTHER PHOSPHOLIPASE D ALPHA 9 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00314 Cca-Chr11 4018660 4022434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00314 38 775 Phospholipase D Gene Family (Wang group) AT1G55180 61.631 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00314 K01115 - gmx:100789235 1474.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00314 11 4018660 4022434 Cca11g00314 11 4018660 4022434 ECH
Cca10g00250 10 2739061 2742283 Cca11g00314 11 4018660 4022434 PCT