Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00309 ATGAGTCGAGAGCAACAGAAGCGGGGGAAACAAGAGAAAGGTTCTGATGCTGCCGAGAAGGTCATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTATGGTCCTTGACTCATGTTGTTCAACCTGGAGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGTGATTGCAGAAGATGGGGTTTTCCAAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCAGAGCAGAAGAGTGACATTACTGATTCTTGCTCTCAGATGATCCTTCAGCTCCATAACGTCTATGATCCAAACAAGATAAATGTGAGGATTAAAATTGTTTCCGGATCACCTTGTGGAGCAGTGGCTGCTGAAGCCAAGAAAGCACAAGCCAATTGGGTTGTATTAGACAAACAGCTAAAAAATGAGGAAAAGCGATGCATGGAAGAATTGCATTGTAACATTGTGGTTATGAAACGTTCTCAACCAAAAGTACTGCGCTTGAATTTGATCGGACCACAGAAGAAGGATGTTGAAGAAGCAGGTCCATCATCTTCTGAGCAAGATGAAATGCCTGAAAAGAAAACCAAACAAAAGCTTGATTCCTTAAATTCTATAAAAGGACCTGCTGTAACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTCACTGCAACTGAAGCTGGCACTTCATCAGTTTCAAGCTCTGATCCTGGAACTTCACCATTCTTTATCTCAGAGATGAATGGTGAGTGCAAAAGGGAGGAAACTATCAAGGAAAGTCAGGAACTTGGTGATACTAATTCAGACACAGAAAGTGAAAGTTTGTCCACATCTTCAGCAAGCATGAGATACCAGCCATGGATCACAGAACTGCTTTTGCATCAACAATCATCACAACGCAATGATGAAAGATCTGATATATCTCATGGTACGCCTCAAACGTCTACAACCAGAGGTTTCCTTGAAAAGTATTCTAGGCTTGATAGGGGGGCTGGATTTGAAATCTCAACCTATAGAAACGACATGGATTTCAGTGGAAATTTGAGAGAAGCGATAGCATTATCCGGAAATGCCCCACCTGGTCCCCCTCCATTATGTTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTAGAACTTGCAACTGGTGGATTTTCACAGGCCAATTTCTTGGCAgaaggagggtttggatctgttcacagaggggttctaccagaaggacaagtcattgctgtcaagcaacataaattggctagttctcaaggtgatcttgaattttgctcagaggTGGAAGTCCTAAGCTGTGCTCAGCACCGGAATGTTGTTATGCTCATTGGATTCTGTATAGAGGACAAGAGAAGGCTACTGGTTTATGAGTATATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGGGATCCACTAGAATGGTCTGCCCGGCAAAAAATTGCTGTGGGGGCTGCTCGTGGGTTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATCCATCGTGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCGCTGGTTGGTGATTTTGGACTAGCAAGGTGGCAGCCTGATGGAGATACTGGTGTGGAAACTAGAGTGATTGGAACATTTGGgtatttggctcctgaatatgctcaaagtggccaaatcactgaaaaagctgatgtttattcctttggggtggtactagtggagcttgttacagggagaaaagctgtggatctcactcggccaaagggtcagcagtgccttactgagtggGCACGTCCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCGAGGCTTGATAATCACTATTCAGAACACGAGGTGTATTGCATGCTACATGCTGCATCCTTATGCATACAGAGAGATCCACAATGTAGACCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGATTCAAATTACATCTCAACTCCAGGTTATGATGTGGGAAACAGGAGTGGTCGAATCTGGTCAGAGCCGTTGCAAAGGCAGCAGCATTATAGTGGTCCCTTGTTAGAAGAGTCTCTGGAGTCCTTCAGTGGGAAGCTATCCCTTGACAAGTACAAGTCTTCTTATTGGGGGGATAGGGACAAGGCTAGACGGGCTTCATGTGAAGATGATATTTGA 2256 0.3887 MSREQQKRGKQEKGSDAAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGDCRRWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKNEEKRCMEELHCNIVVMKRSQPKVLRLNLIGPQKKDVEEAGPSSSEQDEMPEKKTKQKLDSLNSIKGPAVTPTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEMNGECKREETIKESQELGDTNSDTESESLSTSSASMRYQPWITELLLHQQSSQRNDERSDISHGTPQTSTTRGFLEKYSRLDRGAGFEISTYRNDMDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIEELIDPRLDNHYSEHEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVMDSNYISTPGYDVGNRSGRIWSEPLQRQQHYSGPLLEESLESFSGKLSLDKYKSSYWGDRDKARRASCEDDI 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00309 751 CDD USP_Like 20 144 - -
Cca11g00309 751 MobiDBLite consensus disorder prediction 210 251 - -
Cca11g00309 751 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00309 751 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Cca11g00309 751 MobiDBLite consensus disorder prediction 176 289 - -
Cca11g00309 751 PANTHER OS01G0253100 PROTEIN 16 709 IPR045271 GO:0004714|GO:0006468
Cca11g00309 751 CDD STKc_IRAK 410 676 - -
Cca11g00309 751 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Cca11g00309 751 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 709 - -
Cca11g00309 751 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672|GO:0006468
Cca11g00309 751 MobiDBLite consensus disorder prediction 257 274 - -
Cca11g00309 751 MobiDBLite consensus disorder prediction 188 209 - -
Cca11g00309 751 MobiDBLite consensus disorder prediction 304 330 - -
Cca11g00309 751 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Cca11g00309 751 Gene3D Transferase(Phosphotransferase) domain 1 480 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00309 Cca-Chr11 3978520 3982505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00309 384 693 Trihelix Transcription Factor Family AT1G70460 51.562 5.78e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca11g00309 PK_Tyr_Ser-Thr 3.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00309 - - gmx:100816340 1434.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00309 11 3978520 3982505 Cca11g00309 11 3978520 3982505 ECH
Cca10g00247 10 2716990 2720631 Cca11g00309 11 3978520 3982505 PCT