Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00308 ATGGCTTTCTTTGGGAATACAATAGGTGATTCCTTATGGATTTGTCTGAAGGATTTTGATTTCACTTCTTTCTGTTCTCAAAGGAGCATCATAGACACTGCAAATCTACTTTTTGCATGTGTCTTCTACACGTGTGTGATTATCAGTCTAATCAGAACAAGTGGTAGATTCAGGAAGAGTTGGATTTTCCTTCTTGTTTCTATCTTCTGTTCTATTATTAGCATTGCATTTTACAGTATAGGCTTGTGGAATATCATAGCCAAAACTGGCAGCTCTAAGCAGCTGAGCTGGTCATCTTGCATTGTCAGAGGATTCATTTGGACTTCTTTGACAGTTTCTTTGCTTGTTCAGAGACACAAATGGATCATAATTCTCAACTCTTTCTGGTGGATATGTTCCTTTTTATTGGTTTCATCTCTCAACATTGAAATTCTGTTCAGAGAACATGCAATAGAAATTTTGGATACTGCACAATGGCTCGTACACTTCCTTCTTCTCTTCTGTGCCTTTCAAAATCGTGGTTACTTTGTCTCTCAAAGTGTACCAGAAAGTTTATCTGAGCCACTCTTAGCTGAGGAAATTGACACTAAACAAACAGGACTAGGCCATGCTTCCTTTCTCAGCAAGTTGACTTTCTCTTGGGTTAACCCTTTACTAAGTTTGGGTTACTCAAAGCCACTGGCTCTTGAAGACATCCCTTTCCTTCTCTCTGAAGATGAAGCAGACTTGGCCTACCAAAACTTTATGCATGCATGGGAGTCACTTGCAAGGGAGAGGAGCAAGCACAATACCAAAAACTTGGTTCTTTGGTCTGTTTTTAGAACTCACTTAAAAGAAAACATATTAATAGCTTTCTATGCATTTCTCAGAACCATTGCCGTTACTGTTTCTCCTTTAATACTCTATGCTTTTGTTAACTACTCAAATAGCGGGGATACAGATCTTAAGCAAGGTCTTTCCATAGTGGGTTTTCTTATTCTTGCCAAAGTGGTTGATTCTTTGTCCCAGAGACATTGGTTTTTTGATTCCAGGAGGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATAGCCAACAGCTAAAGCTTTCAAGCTCAGCGAGGAGAAGGCACTCAACAGGGGAAATTGAGAATTACATTGCGGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATGTATCATGGACTTGTCCAGTGCAACTTGTTCTATCCATTGGTATACTTTTTGGTGTTGTGGGTGTTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTAATCTGTGGACTTATCAATGTACCATTTGCGAAGATCCAACAAAATTGTATGGCACGGTTTATGATTTCTCAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGCATGAAAATTATTAAGTTACAATCCTGGGAGGACAAATTCAAGAATTTGGTTGAGAACCTACGTGCTAATGAGATCATTTGGCTGTCTAAGACACAGATCATGAAAGCTTATAGCTCATTTCTATATTGGATGTCTCCTACCATAGTTTCTGCTGTTGTTTTCATTGGTTGTGCTCTTTTCAATAGTGCTCCGTTGAATGCTGGGACCATTTTCACAGTTCTTGTAACATTGAGGAACTTGTCAGAACCTGTTCGAATGATCCCTGAGGCTCTGTCTACTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATGCCATTTTGCTTGATGAAGAGCTAGATAGTAGTGATGGTAACTTAAGAACTATAAGCCGAAGTTCAGTTAATGCGGTGGAGATACAAGATGGCAACTTCATTTGGGATCATGAATCAGTGTCCCCAACTTTAAGAGATGTGAACTTGGAAATAAAATGGGGGCAGAAAATTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCTGTACTCGGAGAGATTCCCAAGATCTCGGGAACTGTTAATGTGAGCGGCACCATAGCCTATGTATCTCAAACTTCTTGGATACAAAGTGGGACAGTTCAAGATAATATACTCTTTGGCAAGCCGATGGACAAAATAAGATATGAGAATGCCATTAAAGTTTGTGCTTTAGATAAGGATATTAAGGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAATGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTACAATGATGCTGACATCTATCTCCTGGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATTCTGTTCAATGACTGTGTAATGACGGCTCTAAGAGAGAAAACAGTGATTCTGGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTCGATAAAATCCTGGTAATGGAAAGTGGAAAAGTTACTCAATCAGGTAATTATGAGAATCTCCTGACAACAGGGACAGCCTTTGAACAACTTGTGAGTGCTCATAAAGAATCAATATTAGAGTTGGATCAAAAGAATGAAAACAAAACTCGTACAGAAGAGTCTCAAGGTTTTTATCTCGCGAAGAAACAAAGCGAGGTGGAGATTTCTAACGAGGGTAAACTTGGCGTACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTGGAAGACATTCAGGGATTATATTTCATTTTCCAGGGGTTCATTGATGCTGTGTTGGATCATATTGGCACAATCTGTTTTTGTGGCTTTGCAAACTGCATCAACATTTTGGCTTGCTCTTGGTGTTGAAGTTCCAAATTTATCTAGTGCCACCTTGATTGGAGTTTACTCATTAATTTCATTTCCTAGTTCCGTGTTTGTATATCTAAGGTCTCTCTTTACCGCTTACCTTGGATTAAGAGGTTCTGCAGCCTTCTTCTCAAGTTTCACTACTGCTATCTTCAATGCTCCCATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGTTTCATCAGATTTAAGTATTTTGGACTTTGATATACCTTTTTCCATCACTTTTGTAGCGTCTATTCCAATTGAAATTGTGACGATAATTGGTATAATGGTTTTCGTAACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCTGCAAGGGAATTAATAAGGATCAATGGAACCACTAAAGCTCCTGTCATGAATTTTGCATCTGAGACATCACTTGGTGTGGTTACTATAAGAGCATTTAACATGGCAGACAGATTTTTCAAAAAATACTTAAAGCTTGTGGACACAGACGCAACACTGTTCTTTCATTCTAATGTAGCCATGGAATGGTTACTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTGCAGCTTTGTTACTTATTCTAGCTCCTCAGGGATATGTGTCCCCAGGTCTTGTGGGACTGTCTCTCTCTTATGCTTTCACATTGACAGGTGCTCAAATATTTTGGACTCGATGGTATTGCAACTTATTGAACTATATCATCTCTGTTGAAAGAATCAAGCAATTCATTCACCTACCAGCGGAGCCTCCTGCCATTGTGAAGGACAACCGGCCTCCGTCTTCATGGCCTTCTAAAGGCAGGATTGACCTTCAAGCCTTAGAGATTAGATATCGTCCTAATGCACCATTAGTGCTTAAGGGTATCACTTGTACGTTTAAGGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAATGGTGATATTGTTATAGATGGAATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTCTAGGCCTTTACTCAGATGATGATATATGGAAGGCTCTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCCGTGAGTGATGAAGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCTTGGAAGAGTACTACTCAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACCGCCTCCATTGACTCTGCCACAGATGTCATTTTACAACGAATAATTAGACAAGAATTTGCAGAATGCACAGTGATAACCGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGAcatggtcatggtcctgtcctatgGGAAACTGGTGGAATATGATGAGCCTTCAAAGCTAATGGAGACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCGGGAAGAATTCCTCCTCAAATATTAGCAGGCTGCAACATTAA 4383 0.4004 MAFFGNTIGDSLWICLKDFDFTSFCSQRSIIDTANLLFACVFYTCVIISLIRTSGRFRKSWIFLLVSIFCSIISIAFYSIGLWNIIAKTGSSKQLSWSSCIVRGFIWTSLTVSLLVQRHKWIIILNSFWWICSFLLVSSLNIEILFREHAIEILDTAQWLVHFLLLFCAFQNRGYFVSQSVPESLSEPLLAEEIDTKQTGLGHASFLSKLTFSWVNPLLSLGYSKPLALEDIPFLLSEDEADLAYQNFMHAWESLARERSKHNTKNLVLWSVFRTHLKENILIAFYAFLRTIAVTVSPLILYAFVNYSNSGDTDLKQGLSIVGFLILAKVVDSLSQRHWFFDSRRSGLKMRSALMVAVYSQQLKLSSSARRRHSTGEIENYIAVDAYRMGEFPWWFHVSWTCPVQLVLSIGILFGVVGVGALPGLVPLLICGLINVPFAKIQQNCMARFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLVENLRANEIIWLSKTQIMKAYSSFLYWMSPTIVSAVVFIGCALFNSAPLNAGTIFTVLVTLRNLSEPVRMIPEALSTMIQVKVSFDRLNAILLDEELDSSDGNLRTISRSSVNAVEIQDGNFIWDHESVSPTLRDVNLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVSGTIAYVSQTSWIQSGTVQDNILFGKPMDKIRYENAIKVCALDKDIKDFSHGDLTEIGQRGINMNGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDKILVMESGKVTQSGNYENLLTTGTAFEQLVSAHKESILELDQKNENKTRTEESQGFYLAKKQSEVEISNEGKLGVQLTQEEEKEIGDVGWKTFRDYISFSRGSLMLCWIILAQSVFVALQTASTFWLALGVEVPNLSSATLIGVYSLISFPSSVFVYLRSLFTAYLGLRGSAAFFSSFTTAIFNAPMLFFDSTPVGRILTRVSSDLSILDFDIPFSITFVASIPIEIVTIIGIMVFVTWQVLIVAVPAMVASKYVQGYYQASARELIRINGTTKAPVMNFASETSLGVVTIRAFNMADRFFKKYLKLVDTDATLFFHSNVAMEWLLLRIEALQNLTVITAALLLILAPQGYVSPGLVGLSLSYAFTLTGAQIFWTRWYCNLLNYIISVERIKQFIHLPAEPPAIVKDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPANGDIVIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISRLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDVILQRIIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMETNSSFSKLVAEYWSSCGKNSSSNISRLQH 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00308 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1210 1442 IPR003439 GO:0005524
Cca11g00308 1460 CDD ABCC_MRP_domain2 1206 1426 - -
Cca11g00308 1460 Gene3D ABC transporter type 1, transmembrane domain 268 570 IPR036640 GO:0005524|GO:0016021
Cca11g00308 1460 Gene3D - 1191 1442 IPR027417 -
Cca11g00308 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00308 1460 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 57 1446 - -
Cca11g00308 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 57 1446 - -
Cca11g00308 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Cca11g00308 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00308 1460 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Cca11g00308 1460 Pfam ABC transporter transmembrane region 926 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00308 1460 Pfam ABC transporter transmembrane region 282 543 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00308 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1198 1441 IPR027417 -
Cca11g00308 1460 Gene3D ABC transporter type 1, transmembrane domain 861 1189 IPR036640 GO:0005524|GO:0016021
Cca11g00308 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 819 IPR027417 -
Cca11g00308 1460 SUPERFAMILY ABC transporter transmembrane region 881 1190 IPR036640 GO:0005524|GO:0016021
Cca11g00308 1460 CDD ABCC_MRP_domain1 597 797 - -
Cca11g00308 1460 CDD ABC_6TM_ABCC_D2 890 1183 IPR044726 GO:0140359
Cca11g00308 1460 Gene3D - 571 847 IPR027417 -
Cca11g00308 1460 SUPERFAMILY ABC transporter transmembrane region 269 576 IPR036640 GO:0005524|GO:0016021
Cca11g00308 1460 SMART AAA_5 624 797 IPR003593 -
Cca11g00308 1460 SMART AAA_5 1234 1426 IPR003593 -
Cca11g00308 1460 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Cca11g00308 1460 Pfam ABC transporter 1225 1373 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00308 Cca-Chr11 3913317 3919701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00308 597 841 Calmodulin-binding Proteins AT2G36910 26.437 2.41e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00308 - - gmx:100784827 2427.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00308 11 3913317 3919701 Cca11g00308 11 3913317 3919701 ECH