Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00307 AAGCTGAGCTGGTTAGGTTTTGTCAGAGGATTCATTTGGTCTTCTTTGACAGTTTCATTGCTTGTTCAGAGACACAAATGGATCAAAATTCTGAACTGTGTCTGGTGGACATGTTCCTGTGTATTGGTTTCAGCTCTCAACATTGAAATTTTGTTCAGAGAACATGCAATAGAAATTTTTGATATTGCACAATGGCTCGTACACTTTCTTCTTCTCTTCTGTGCCTTCCAAAATCTTGGTTACTTAGTCTCTCGAAGTGTACCAGAAAGTTTATCTGAGCCACTCTTAGCTGAGGAAAATGATACTAAACAAACGGGACTAGGCCATGCTTCCTTTCTCAGCAAGTTGACTTTCTCTTGGATTAACCCTTTACTAAGTTTGGGTTACTCAAAGCCATTAGCTCTTGAAGACATTCCTTCCCTTCTTTCTGAAGATGAAGCTGACTTGGCCTACCAAAACTTTATGCATGCATGGGAATCACTTGCGAGGGAGAGGAGCAAGCACAATACCAAAAACTTGGTTCTTTGGTCTATTGTTAGAACTCACTTAAAAGAGAACATATTAATAGGTTTTTACGCATTACTCAGGACCATTGCCGTTAGCCTTTCTCCTTTAATAATCTATGCTTTTGTGAAATACTCAAATGGGAAGGATAAAGATCTTAAAGAAGGTCTTTTCATAGTGGGTTTTGTTATTGTGTCCAAAGTGGTTGATTCTGTGTTCCAGAGACATTGGTTTTTTGATTCCAGGAGGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTACAGAAAACAGCTAAAGCTTTCAAGCTCAGCGAGGAGAAGGCACTCAACAGGTGAAATTGTGAATTACATTGTGGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATATGACATGGACTTCTACATTGCTACTTGTTCTATCTATTGGTGTCCTTTTTGGTGTTGTAGGTGTTGGTGCTCTTCCTGGTTTAGTTCCTCTTGTCATATGTGGACTTATGAATGTACCATTTGCCAAGATCCTACAAAATTGTATAGCGAAGTTCATGATTTCACAGGATGATCGTCTTAGATCAACTACAGAAATTCTAAACAGCATGAAAATCATTAAGTTACAATCCTGGGAGGAAAAATTCAAGAATTTGGTTGAAAATCTACGGGCTGAAGAGTTCATTTGGCTGTCTAAGGCTCAGATGATGAAAGCCTATGGGTCATTTCTATATTGGATGTCTCCTACCATAGTTTCTGCTGTTGTTTTCCTTGGTTGTGCTCTTTTCAAAAGTGCCCCGTTGAATGCTGCTACCATTTTCACAGTTTTTGCAACATTGAGGAACTTATCAGAACCTGTTAAAATGATCCCAGAGGCTCTCTCTAATATCATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATGCCATTTTGCTTGATGAAGAGCTAGATAGTAGTGATGGTAACACAAGAAATATAAGCCGAAGTTCAGTTAATGCGGTGGAAATACAAGATGGCAACTTCACTTGGGATCATGAATCACTGTCCCTAATTTTAAGAGATGTGAACTTGGAAATAAAATGGGGACAGAAAATTGCAGTCTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATTCTGGGAGAGATTCCGAGGATCTCAGGAACTGTTAATGTGAACGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTCGGCAAGCCAATGGATAAAACAAGATACGAGAATGCCATCAAAGTTTGTGCTTTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTCACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTACAATGATGCTGACATCTTTCTCCTCGATGACCCTTTCAGCGCAGTTGATGCTCATACTGCTGCTATTCTGTTCAATGACTGTGTAATGACAGCACTTAGAGACAAAACAGTCATTCTCGTTACTCATCAAGTTGAGTTTCTCTCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACCCAATCAGGTAATTATGAGAATCTCTTGACAGCTGGGACAGCCTTTGAACAACTTGTGAGTGCTCATAAAGAAACAATTTCAGAGTTGGATCAAAATAATGAAAACAAAACTCATACAGAAGAGTCTCAAGGTTTTTATCTCACTGAAACCCAAAGTGAGGGGGAGATTTCTACCGAGGGTCAACTTGGGGTACAACTTACACAAGAAGAAGAAAAAGAAATTGGTGATGTTGGATGGAAGACATTCTGGGATTATATTTCATTTTCTAGGGGTGCATTGATGCTGTGTTGGATCATATTAGCACAATCTGTTTTTATTGTTTTGCAGACTGGATCAATGTTTTGGCTTGCTCTAGCCATTGAAGTTCCAAAATTATCTAGTGCTACCTTGATTGGAGTTTACTCATTAATTTCATTTGGTGGTACTGCATTTGCATTACTAAGGTCTATCTTTGGTGCAAAACTCGGATTAAAAGCTTCTACAACCTTCTTCACAAGTTTCACTACTGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTTGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATACCTCTTGCCATCACTTTTGCAGCATCTATTCCACTTGAAATTGTGCTAGTAATTTGTATAATGGCTGCCATGACATGGCAAGTTCTCATTGTTGCTGTTCCAGCAATGGTTGCATCAAAATATTTTCAGGGATATTATCAAGTCTCAGCAAGGGAATTAATAAGGATCAGTGGAACCACAAAAGCTCCCGTCATGAATTTTGCATCCGAGACGTCACTTGGTGTGGTTACTGTAAGAGCATTTAACATGGCAGACAGATTTTTCAAAAATTACTTAAAGCTTGTGGACACAGACGCAACACTGTTCTTGCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTGCAACTTTGCTACTTGTTCTAGTTCCTCAGGGATACGTGTCCTCAGGCCTTGCAGCACTGTCGCTCTCTTATGCTTTCTCCTTGACAGGAGCACAAGTATTTTGGACTCGATGGTATTGCAACTTATTGAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCATCAACATACCGGCAGAGCCTCCTGCCATTGTGGAAGACAACCGGCCTCCCTCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGATTAGATATCGTCCTAATGCTCCGTTAGTGCTTAAGGGTATCACTTGTACGTTTAAGGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTGGTTGAGCCTGCAAGTGGTGATATTGTTATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGATCCCCTAGGCTTGTACTCAGATGATGATATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAATAATCAGCAGTCTACCACATCTCTTGGACTCTTCTGTAAGTGATGAAGGAGGGAATTGGAGCTTGGGACAGCGCCAACTGTTTTGCCTTGGAAGAGTATTACTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCTTCCATTGACTCTGCCACGGATGTAATTCTACAACGAATAATTAGACAGGAATTTGCGGAATGCACAGTGATAACCGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCCTATGGGAAACTGGTGGAATATGATGAACCTTCAAAGCTAATGGAGACCAACTCTTCATTCTCTAAGCTGGTTGCTGAATATTGGTCCAGCTGCAGGAAGACTACTCAAATACCAGACAGCAACATTGAATAA 4098 0.4021 KLSWLGFVRGFIWSSLTVSLLVQRHKWIKILNCVWWTCSCVLVSALNIEILFREHAIEIFDIAQWLVHFLLLFCAFQNLGYLVSRSVPESLSEPLLAEENDTKQTGLGHASFLSKLTFSWINPLLSLGYSKPLALEDIPSLLSEDEADLAYQNFMHAWESLARERSKHNTKNLVLWSIVRTHLKENILIGFYALLRTIAVSLSPLIIYAFVKYSNGKDKDLKEGLFIVGFVIVSKVVDSVFQRHWFFDSRRSGLKMRSALMVAVYRKQLKLSSSARRRHSTGEIVNYIVVDAYRMGEFPWWFHMTWTSTLLLVLSIGVLFGVVGVGALPGLVPLVICGLMNVPFAKILQNCIAKFMISQDDRLRSTTEILNSMKIIKLQSWEEKFKNLVENLRAEEFIWLSKAQMMKAYGSFLYWMSPTIVSAVVFLGCALFKSAPLNAATIFTVFATLRNLSEPVKMIPEALSNIIQVKVSFDRLNAILLDEELDSSDGNTRNISRSSVNAVEIQDGNFTWDHESLSLILRDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPRISGTVNVNGTIAYVSQTSWIQSGTVQDNILFGKPMDKTRYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIFLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILVTHQVEFLSEVDTILVMEGGKVTQSGNYENLLTAGTAFEQLVSAHKETISELDQNNENKTHTEESQGFYLTETQSEGEISTEGQLGVQLTQEEEKEIGDVGWKTFWDYISFSRGALMLCWIILAQSVFIVLQTGSMFWLALAIEVPKLSSATLIGVYSLISFGGTAFALLRSIFGAKLGLKASTTFFTSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPLAITFAASIPLEIVLVICIMAAMTWQVLIVAVPAMVASKYFQGYYQVSARELIRISGTTKAPVMNFASETSLGVVTVRAFNMADRFFKNYLKLVDTDATLFLHSNVAMEWLVLRIEALQNLTVITATLLLVLVPQGYVSSGLAALSLSYAFSLTGAQVFWTRWYCNLLNYLISVERIKQFINIPAEPPAIVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPASGDIVIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKEIISSLPHLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDVILQRIIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMETNSSFSKLVAEYWSSCRKTTQIPDSNIE 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00307 1365 Gene3D - 513 756 IPR027417 -
Cca11g00307 1365 Pfam ABC transporter 521 655 IPR003439 GO:0005524
Cca11g00307 1365 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 802 1064 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00307 1365 CDD ABCC_MRP_domain2 1112 1332 - -
Cca11g00307 1365 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 9 1355 - -
Cca11g00307 1365 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 187 468 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00307 1365 ProSitePatterns ABC transporters family signature. 628 642 IPR017871 GO:0005524
Cca11g00307 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 725 IPR027417 -
Cca11g00307 1365 Gene3D ABC transporter type 1, transmembrane domain 766 1095 IPR036640 GO:0005524|GO:0016021
Cca11g00307 1365 Gene3D ABC transporter type 1, transmembrane domain 160 484 IPR036640 GO:0005524|GO:0016021
Cca11g00307 1365 CDD ABC_6TM_ABCC_D2 796 1089 IPR044726 GO:0140359
Cca11g00307 1365 CDD ABCC_MRP_domain1 503 703 - -
Cca11g00307 1365 CDD ABC_6TM_ABCC_D1 188 476 IPR044746 GO:0140359
Cca11g00307 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1104 1347 IPR027417 -
Cca11g00307 1365 SMART AAA_5 530 703 IPR003593 -
Cca11g00307 1365 SMART AAA_5 1140 1332 IPR003593 -
Cca11g00307 1365 Pfam ABC transporter transmembrane region 188 448 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00307 1365 Pfam ABC transporter transmembrane region 832 1063 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00307 1365 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1116 1348 IPR003439 GO:0005524
Cca11g00307 1365 SUPERFAMILY ABC transporter transmembrane region 787 1096 IPR036640 GO:0005524|GO:0016021
Cca11g00307 1365 Pfam ABC transporter 1131 1279 IPR003439 GO:0005524
Cca11g00307 1365 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 9 1355 - -
Cca11g00307 1365 Gene3D - 1097 1348 IPR027417 -
Cca11g00307 1365 SUPERFAMILY ABC transporter transmembrane region 175 482 IPR036640 GO:0005524|GO:0016021
Cca11g00307 1365 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 726 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00307 Cca-Chr11 3901331 3906790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00307 503 747 Calmodulin-binding Proteins AT2G36910 27.586 7.07e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00307 - - gmx:100790301 2270.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00307 11 3901331 3906790 Cca11g00307 11 3901331 3906790 ECH