Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00304 ATGGCAAGTTATGGGAAAGCAATAGGTGATTTCTCATGGATTTGTCTGATGGATTTTGATTTCACTTCTTTCTGTTCTCAAAGGAGCACAATAGACACAATAAATCTACTTTTAGTCTGTGTCTTCTACACGTGTGTAATTATTAGTCTAATCAGAAAAAGTTCTACAAGTGGTAGATTCAGGAAAAGTAGGATTTTCCTTCTTGTCTCTATCTTCTGTGCAACCATTAGCCTTGCATTTTACAGTATAGGCTTGTGGAATCTTATAGCCAAAACTGGTAACTCTAAGGAGCTGAGCTGGCTAGCTTGCATTGTCAGAGGATTCATTTGGACTTCTTTGACAGTTTCTTTGCATGTTCAGGGACACAAATGCATCAAAATTCTAAATTCCTTCTGGTGGACATGTTCCTGTGTACTGGTTTCAGCACTCAACATTGAAATTCTGTTTAGAAAGCACGCAATCGGAATTTTTTATATCGTACAATGGCTCGTACACTTCCTTCTTCTCTTCTGTGCCTTCCAAAATCTTGGTTACTTTGTCTCTCAAAGTGTACCAGAAAGTTTATCTGAGCCACTCTTAGCTGAGGAAATTGACACTACACAAACAGGACTAGGCCATGCTTCCTTTCTCAGCAAGTTGACTTTCTCTTGGGTTAATCCTTTACTAAGTTTGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTTCCCTTCTCTCTGAAGATGAAGCAGACTTGGCCTACCAAAACTTTATGCATGCATGGGAATCACTTGCAAGGGAGAGGAGCAAGCACAAATCCGAAAACTTGGTTCTTTGGTCTGTTGTTAGAACTCACTTAAAAGAAAACATATTAATAGCTTTTTATGCATTACTCAGAACCATTGCGGTTACTGTTTCTCCCTTAATACTGTATGCTTTTGTAAACTACTCAAATAGAAAGGGTACAGATCTCAAAGAAGGTCTTTCCATAATGGGTTTTCTTATTGTGTCCAAAGTGGTCGATTCTGTGTTCCAGAGACATTGGTTTTTTGATTCCAGGAGGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTACAGAAAACAGCTAAAGCTTTCAAGCTCAGCACGGAGAAGGCACTCAACAGGTGAAATTGTGAATTACATTGCGGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATATGACATGGACTTCTGCATTGCAAGTTGTTCTATCTATTGGTATCCTTTTTGGTGTTGTGGGTGTTGGTGCTCTGCCCGGTTTAGTCCCTCTTGTCATCTGTGGACTTATCAATATACCATTTGCCAGGATAATACAAAATTGTATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGCATGAAAATCATTAAGTTACAATCCTGGGAGGACAAATTCAAGAATCTGGTTGAAAACCTACGGGAGGAAGAGTTCATTTGGCTGTCCAAGGCACTGATTATGAAAGCTTATGGCTCGTTTCTATATTGGATGTCTCCTACAGTCGTTTCTGCAGTTGTTTTCCTTGGTTGTGCTCTTTTCAACAGTGCCCCATTGAATGCTGCAACCATTTTCACAGTTTTTGCAACATTGAGGAACTTATCAGAACCTGTTCGAATGATCCCAGAAGCTCTATCGAATATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATATCATTTTGCTTGACCAAGAGCTAGATAGTGATACTAATGGAAGAAATATAAAGCGAAGTTCAGTTAACGCAGTGAAAATCCAAGGTGGCAACTTCATTTGGGATCATGAATCAGTGTCCCCAACTTTAATGGATGTGAATGTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGGCCGGTTGGAGCTGGAAAATCATCTCTTTTGCATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACAGTTAATGTGAGCAGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTCGGCAAGCCCATGGACAAGACAAGATACGAGAATGCCATTAAAGTTTGTGCTTTGGATAAGGATATTAAGGATTTTAGCCATGGTGATCTTACTGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGGCAAAAGCAAAGGATTCAACTAGCACGTGCAGTTTACAATGATGCTGACATCTATCTCCTCGATGACCCTTTCAGCGCAGTTGATGCTCATACTGCTGCTATATTGTTCAATGACTGTGTAATGACGGCTCTAAGAGAGAAAACAGTGGTTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTCAATCAGGTAATTATGAGGATCTCCTGACAACTGGGGCACCCTTTGAACAACTTGTGAGCGCTCATAAAGAAGCAATTTCCGAGTTGGATCAAAATAATGAAAACAAAAGACATATAGAAGAGTCTCAAGGTTTTTATCTCGATGAAAACCAAAGTGAGGGGGAGATTTCTAACGAGGGTCAACTTGGGGTACAACTTACACAAGAAGAAGAAAAAGAAATTGGTGATGTTGGCTGGAAGACATTCAGGGATTATATTTCATTTTCCAGGGGTACATTGATGCTGTGTTGTATCATATTAGCACAATCTGTTTTTGTTGCTTTGCAAACTGCATCAACTTTTTGGCTTGCTCTAGCTATTGAAGTTCCAAAATTATCTAGTGCCACCTTGATTGGAGTTTACTCATTAATTTCATTTGCTAGTTCTGCGTTTGTATATCTAAGGTCTCTCTTTACCGCTTACCTTGGATTAAGAGGTTCTGCAGCCTTCTTCTCAGGTTTCACTACTGCTATCTTCAATGCTCCCATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGGTTTTAGTATTTTGGACTTTGATATACCTTTTTTCGTCACTTTTGTAGCGGCTGGTCCAATTGAAATTGTGGCGATAATTTATATCCTGGTTTCCATAACATGGCACGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCTGCAAGGGAATTAATTAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCATCTGAGACATCACTTGGTGTGGTTACTGTAAGAGCATATAATATGGCAGACAGATTCTTTAAAAATTACTTAAAGCTTGTGGAGACAGACGCAACACTGTTCTTTCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTGCAGCTTTGTTGCTTATTCTAGCTCCTCAGGGATATGTGTCTCCAGGCCTTGTGGGACTGTCACTCTCTTATGCTTTCACCTTGACAGGATCCCAAATATTTTTGACTCGATGGTATTGCAACTTATTGAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCATTCACCTACCGGCGGAGCCTCCTTCCATTGTGAAGGACAACCGACCTCCATCTTCATGGCCTTCTAAAGGCAGGATTGACCTTCAAGCCTTGGAGATTAGATATCGTCCTAATGCACCATTAGTGCTTAAGGGTATCACTTGTACGTTTAAGGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAATGGTGATATTGTTATAGATGGAATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTCTAGGCCTTTACTCAGATGATGATATATGGAAGGCTCTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTCCGTGAGTGATGAAGGAGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCTTGGGAGAATACTACTCAAGAGGAACAAAATTCTTGTTCTGGATGAAGCTACCGCCTCCGTTGACTCTGCCACAGATGTCATTCTACAACGAATAATTAGACAAGAATTTGCAGAATGCACAGTGATAACCGTGGCTCACAGGGATCCAACTGTAATAGATAGTGAcatggtcatggtcctgtcctatgGGAAACTGGTGGAATATGATGAGCCTTCAAAGCTAATGAAGACCAATTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAAGAATTCCTCCTCAGATATTAGTAGGCTGCAACATTGA 4389 0.4028 MASYGKAIGDFSWICLMDFDFTSFCSQRSTIDTINLLLVCVFYTCVIISLIRKSSTSGRFRKSRIFLLVSIFCATISLAFYSIGLWNLIAKTGNSKELSWLACIVRGFIWTSLTVSLHVQGHKCIKILNSFWWTCSCVLVSALNIEILFRKHAIGIFYIVQWLVHFLLLFCAFQNLGYFVSQSVPESLSEPLLAEEIDTTQTGLGHASFLSKLTFSWVNPLLSLGYSKPLALEDIPSLLSEDEADLAYQNFMHAWESLARERSKHKSENLVLWSVVRTHLKENILIAFYALLRTIAVTVSPLILYAFVNYSNRKGTDLKEGLSIMGFLIVSKVVDSVFQRHWFFDSRRSGLKMRSALMVAVYRKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHMTWTSALQVVLSIGILFGVVGVGALPGLVPLVICGLINIPFARIIQNCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLVENLREEEFIWLSKALIMKAYGSFLYWMSPTVVSAVVFLGCALFNSAPLNAATIFTVFATLRNLSEPVRMIPEALSNMIQVKVSFDRLNIILLDQELDSDTNGRNIKRSSVNAVKIQGGNFIWDHESVSPTLMDVNVEIKWGQKIAVCGPVGAGKSSLLHAVLGEIPKISGTVNVSSTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYENAIKVCALDKDIKDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVVLVTHQVEFLSEVDTILVMEGGKVTQSGNYEDLLTTGAPFEQLVSAHKEAISELDQNNENKRHIEESQGFYLDENQSEGEISNEGQLGVQLTQEEEKEIGDVGWKTFRDYISFSRGTLMLCCIILAQSVFVALQTASTFWLALAIEVPKLSSATLIGVYSLISFASSAFVYLRSLFTAYLGLRGSAAFFSGFTTAIFNAPMLFFDSTPVGRILTRASSGFSILDFDIPFFVTFVAAGPIEIVAIIYILVSITWHVLIVAVPAMVASKYVQGYYQASARELIRINGTTKAPVMNFASETSLGVVTVRAYNMADRFFKNYLKLVETDATLFFHSNVAMEWLVLRIEALQNLTVITAALLLILAPQGYVSPGLVGLSLSYAFTLTGSQIFLTRWYCNLLNYLISVERIKQFIHLPAEPPSIVKDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPANGDIVIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISRLPNLLDSSVSDEGGNWSLGQRQLFCLGRILLKRNKILVLDEATASVDSATDVILQRIIRQEFAECTVITVAHRDPTVIDSDMVMVLSYGKLVEYDEPSKLMKTNSSFSKLVAEYWSSCRKNSSSDISRLQH 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00304 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1200 1443 IPR027417 -
Cca11g00304 1462 SMART AAA_5 1236 1421 IPR003593 -
Cca11g00304 1462 SMART AAA_5 626 799 IPR003593 -
Cca11g00304 1462 Pfam ABC transporter transmembrane region 285 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00304 1462 Pfam ABC transporter transmembrane region 927 1160 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00304 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1212 1444 IPR003439 GO:0005524
Cca11g00304 1462 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524
Cca11g00304 1462 SUPERFAMILY ABC transporter transmembrane region 893 1192 IPR036640 GO:0005524|GO:0016021
Cca11g00304 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 899 1173 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00304 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 565 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca11g00304 1462 CDD ABCC_MRP_domain1 599 799 - -
Cca11g00304 1462 CDD ABC_6TM_ABCC_D2 892 1185 IPR044726 GO:0140359
Cca11g00304 1462 SUPERFAMILY ABC transporter transmembrane region 272 579 IPR036640 GO:0005524|GO:0016021
Cca11g00304 1462 Gene3D - 606 851 IPR027417 -
Cca11g00304 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 821 IPR027417 -
Cca11g00304 1462 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Cca11g00304 1462 CDD ABCC_MRP_domain2 1208 1428 - -
Cca11g00304 1462 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Cca11g00304 1462 Pfam ABC transporter 1227 1375 IPR003439 GO:0005524
Cca11g00304 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Cca11g00304 1462 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 63 1453 - -
Cca11g00304 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1453 - -
Cca11g00304 1462 Gene3D ABC transporter type 1, transmembrane domain 257 581 IPR036640 GO:0005524|GO:0016021
Cca11g00304 1462 Gene3D ABC transporter type 1, transmembrane domain 863 1191 IPR036640 GO:0005524|GO:0016021
Cca11g00304 1462 Gene3D - 1193 1444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00304 Cca-Chr11 3858279 3863990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00304 591 828 Calmodulin-binding Proteins AT2G36910 26.592 5.54e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00304 - - gmx:100784827 2415.57