Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00299 ATGCAAGACGCAACATCATTCCAAGGTTTGAAGGCAGCCCAATTTCCCGAACAAGAACAACTGAAATGCCCACGTTGTGATTCGACAAACACGAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCACTTCTGCAAGAACTGCAGAAGGTACTGGACCAAAGGTGGCGCCTTGAGAAACATCCCCGTTGGGGGTGGAAGCAGAAAGACCACAAAACGCTCTTCAACCTCTAAACGCTCTTCTGCACTACCTTCCCCTGCAGTTTccgaccccgacccgacccggatccacaccgtcccgGTTGATCAAGGGGTGCTCACCATTGGTGGTGGCAGCTTCAGTTCCCTTTTGGCATCTTCTGGCCACTTCGGAACCATCTTGGAGGGTCTCAATCCATCTGGGTCGGGTCCCAAAATGGCTGAATTTGGGGAGGGCGTGGGTTCTGACCCGGGTTTGAATTCGGGTTCGGGTACCGACCCGGGGTTGCAGGTTCAGAGTAATGCGAGTTCAGAGAGTTTTCTTGGAATGCAGAATGCTGATTCGGGCTGTTGGAATGGTTCTCATGGTTGGTCTGATCTTGCAATGTACACACCTGCCCCAAGTTTTCGATAG 621 0.4815 MQDATSFQGLKAAQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRSSTSKRSSALPSPAVSDPDPTRIHTVPVDQGVLTIGGGSFSSLLASSGHFGTILEGLNPSGSGPKMAEFGEGVGSDPGLNSGSGTDPGLQVQSNASSESFLGMQNADSGCWNGSHGWSDLAMYTPAPSFR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00299 206 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Cca11g00299 206 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Cca11g00299 206 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Cca11g00299 206 MobiDBLite consensus disorder prediction 70 87 - -
Cca11g00299 206 MobiDBLite consensus disorder prediction 145 168 - -
Cca11g00299 206 MobiDBLite consensus disorder prediction 154 168 - -
Cca11g00299 206 MobiDBLite consensus disorder prediction 62 98 - -
Cca11g00299 206 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 205 IPR045174 GO:0003700|GO:0006355
Cca11g00299 206 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 7 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00299 Cca-Chr11 3759124 3760437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00299 14 130 C2C2-Dof Transcription Factor Family AT1G51700 56.204 4.75e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca11g00299 zf-Dof 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00299 - - gmx:100790822 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00299 11 3759124 3760437 Cca11g00299 11 3759124 3760437 ECH
Cca10g00242 10 2656559 2661092 Cca11g00299 11 3759124 3760437 PCT