Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00292 ATGGCGACAGTTCCAGGGCAGCTCGTGTGGGAGATCGTGAAGAAGAACAACTCATTCTTGGTGAAACAGTTCGGAAGGGGCACTCAGAGCATCCAATTCAGCAGAGAGCCAAACAATCTCTATAACCTCAATTCTTTCAAGTACTCTGGTTTGGCAAACAAGAAGACTGTTACCGTTCAGCCAGCTGGAAAAGATCTGTCTGTGTTGTTTGCCACAACAAAGACGAAGAAGCAAAACAAGCCCTCTGCTTTGCTTCACAAATCTGTGATGAAGAAGGAGTTCAGGAGGATGGCAAAGGCTGTGGAAAACCAGGTGGCAGAAAATTACTACAGGCCTGATCTCAAGAAGGCTGCTCTTGCTAGGTTGAGTGTTGTTCATAGAAGCCTCAAAGTTGCCAAGTCTGGTGCCAAGAAGAGGAATAGACAGGCTGTGAAGGTCCATGGCAGGAAGTGA 453 0.4702 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSIQFSREPNNLYNLNSFKYSGLANKKTVTVQPAGKDLSVLFATTKTKKQNKPSALLHKSVMKKEFRRMAKAVENQVAENYYRPDLKKAALARLSVVHRSLKVAKSGAKKRNRQAVKVHGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00292 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Cca11g00292 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Cca11g00292 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Cca11g00292 150 Gene3D - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00292 Cca-Chr11 3651853 3654799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00292 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 70.629 2.70e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00292 K02903 - gmx:100499921 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00292 11 3651853 3654799 Cca10g00239 10 2636452 2640135 ECH
Cca11g00292 11 3651853 3654799 Cca11g00292 11 3651853 3654799 ECH
Cca10g00239 10 2636452 2640135 Cca11g00292 11 3651853 3654799 PCT