Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00285 ATGGATGGTTTGAGTTGGGATGCCTCACAACTGTGGAGTACTATTCAGCAACCACCAGACTTTGAAGGAGGCTACTCCATGCCCAATGTTCTAAACCAAATACAAGAGATGCAGAAGGCTCAAACAGGTCATGCACACTCAAATTCTGAAAGAGTGATTTATCATTCAGCAGGTGCTACCACTTCTTCAGAGATAATGGATGTGATGCAAAAGCAAAACACAAATCTGTCACAGCATGTGTCAACCATGCCAGTGAAATCAGGAGCTGGTGCCAGTTGGGGAGAAACTTTGAAATCCCAATCATACCCATCCCTATCAATCAATGGACCTCATCACAGTATGAACCTAATTAGCAACTACATGCCAGATTTCAACATGGCCCACCACCGCCAACAACAACAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTTGCTCTATTGATTCTTTTGATCATTGCTTGCTTTCAGCTACTAACAGCAACACAGACAATTCTGTTGAAGATGATGGGATTTCAATGATCTTGTCTGACTGTGGAAACTTGTGGAAGTTCAGTTATGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCTTCCAATGGTAGAAACAACAAAGACATGCAGTGTTCAGTCAATGAAGTTGATGAAACAGTTTCTCAAAGCACCTTGGGTAGAGGAAAAAGAGTAGAGTCAAAGACTAATTGTTCAAAGAGTAGTCATGATCAATCTGAAATGATCAAAGTTGGTGCCACTGCTAGTGATTCCTGCTTCAGTATGGTTCAGAATCCTTCTTCTATTGAAGAAGGTGGTTTCAGACTTATCTCAGACGATCCACCACAATGCAAGAAACCCAGATGGGATAGGAGTTCCTTTTCAAATAGTATCAATTTCCAGCAACCAACTTGTTCTATTGAAGAACCTGATCCAGAGGCTATTGCACAGATGAAGGAAATGATATATAGGGCTGCTGCCTTTAGGCCTGTGAACTTTGGCATGGAGGTGGTTGAAAAGCCTAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACTGTGGCTGCAAGGCACAGAAGAGAGAAAATAAGTGAGAGGATTAGGGTTTTGCAAAAGCTTGTGCCTGGCGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTAGAAAGTCTAGGCAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCATTCTCTTTCAACCCTTCTTTTCCCATGCATCCTCTCAGTCACATCCATCATTCCCAGGGTTGA 1329 0.4296 MDGLSWDASQLWSTIQQPPDFEGGYSMPNVLNQIQEMQKAQTGHAHSNSERVIYHSAGATTSSEIMDVMQKQNTNLSQHVSTMPVKSGAGASWGETLKSQSYPSLSINGPHHSMNLISNYMPDFNMAHHRQQQQQLVNGSQNGKGACSIDSFDHCLLSATNSNTDNSVEDDGISMILSDCGNLWKFSYGSAASTGESESNASNGRNNKDMQCSVNEVDETVSQSTLGRGKRVESKTNCSKSSHDQSEMIKVGATASDSCFSMVQNPSSIEEGGFRLISDDPPQCKKPRWDRSSFSNSINFQQPTCSIEEPDPEAIAQMKEMIYRAAAFRPVNFGMEVVEKPKRKNVRISSDPQTVAARHRREKISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMHPLSHIHHSQG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00285 442 MobiDBLite consensus disorder prediction 222 245 - -
Cca11g00285 442 Coils Coil 387 407 - -
Cca11g00285 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 410 IPR036638 GO:0046983
Cca11g00285 442 SMART finulus 354 403 IPR011598 GO:0046983
Cca11g00285 442 CDD bHLH_AtIND_like 349 407 - -
Cca11g00285 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Cca11g00285 442 PANTHER TRANSCRIPTION FACTOR BHLH87 79 433 - -
Cca11g00285 442 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 79 433 IPR045843 GO:0003700|GO:0006355
Cca11g00285 442 Gene3D - 353 415 IPR036638 GO:0046983
Cca11g00285 442 Pfam Helix-loop-helix DNA-binding domain 358 397 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00285 Cca-Chr11 3556084 3558337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00285 111 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.127 3.14e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00285 HLH 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00285 - - gmx:100793975 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00285 11 3556084 3558337 Cca11g00285 11 3556084 3558337 ECH
Cca10g00236 10 2592715 2594037 Cca11g00285 11 3556084 3558337 PCT