Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00284 ATGCATTGCTCACTTGAGTCACTTCATCTTCAATTTGCACGCAGGGATTTGTCCAATAACAGTTTGACTGGTTCTATTCCTGATTCATTATCTGAACTCCAGTCCCTGAGGGTTTTAAATATAGGAGGAAATAAGCTATCAGGCTCAGTTCCTGCAAAACTCTCTGAGAGATCAAGGAATGGTGTTGGTGGAAATCCAAATCTTTGCATCACAAGTGCATGCCACATGACAGTTGATGATGTCAAAAAAGGAAGAAGGAATAAGACAACAATTACGTTGGTAGTAACACTTGTTGGAGCCCTCATTCTTCTTTCAGCAGCACTCTCGTTTATTTTTAGAAGAAGACTACAAGTGGTGATAAGTACGTACAAGTTGAGTTGTTTGAACAAAATAGTGAGCATAGACTCGAAGAAACAAGAGTTCACGTACTCGGAGGTTCAAAGTATTACGAATAATTTTGAGAGGGTTGTGGGTAAAGGAGGATTCGGAACTGTTTACTGTGGTTGCATAGGTGAAACACAGGTAGCAGTCAAGATGCTCTCTCCTTCAACACAAGGGTATCAACAATTTCAGACAGAGGCAAAAATTCTGACAAGAGTACACCATAAATGCTTGACTCCACTAATTGGATATTGCAATGAAGGCACCAATACAGCGCTCATTTATGAATACATGACCAACGGAAACTTAGCTGAGCACCTTTCAGGTGAAAGTCAAACACTCTTAGGTTGGAAACAGAGACTTCAAATTGCTCTGGATTCTGCAGTAGGCTTGGAGTACCTTCATAATGGTTGCAAGCCCCCAATTGTTCACAGAGATGTTAAGACCAGAAACATTTTACTCAATGAAAATCTCCGTGGTAAAATATCTGATTTTGGATTATCAAGGATCTTCCCAGATGAAAGTGATACCCATATATCAACAGTAATTGCAGGCACCCCAGGATACCTTGACCCTGAGTATTTGGCTGCACCTTTGGAGACACTTGGGAGGGCTGCAGCTGAACTACAGATCAAAAAACGGACTCTTATTGGTATGGATTTGCAATTTGAGGTGGAGGAGGTGGAAGCTTTTGTGAAACAACCTGATGGTTCTGTTTTCAGTTGGCCCGCACGGTTTTGTTTTTGGGCTCCTTCCCAAAAGGCCTCATACTATGGAATGGTAAAATCCATGGTGGATGATGATGATGAAATTGATAGCATTATGGATGCAAGGTTAGAAGGAGAGTATGACAGTGATGATGCAAGGAAAGTGGTGGATGTAGCAATGGCTTGTGTAGCTCCTAATTCTGTTAATAGGCCAAGAATGAATGAAGTGGTGATGGAATTAAAACAGTGTTTGCCCATGGGGAAACTTGAGAGTACGTCCAGTGGATCCATTCAAATTTTCTCCATGGGTTCCATCAGTGGACTTAGCTCTTTAGAAAGGTAA 1431 0.4137 MHCSLESLHLQFARRDLSNNSLTGSIPDSLSELQSLRVLNIGGNKLSGSVPAKLSERSRNGVGGNPNLCITSACHMTVDDVKKGRRNKTTITLVVTLVGALILLSAALSFIFRRRLQVVISTYKLSCLNKIVSIDSKKQEFTYSEVQSITNNFERVVGKGGFGTVYCGCIGETQVAVKMLSPSTQGYQQFQTEAKILTRVHHKCLTPLIGYCNEGTNTALIYEYMTNGNLAEHLSGESQTLLGWKQRLQIALDSAVGLEYLHNGCKPPIVHRDVKTRNILLNENLRGKISDFGLSRIFPDESDTHISTVIAGTPGYLDPEYLAAPLETLGRAAAELQIKKRTLIGMDLQFEVEEVEAFVKQPDGSVFSWPARFCFWAPSQKASYYGMVKSMVDDDDEIDSIMDARLEGEYDSDDARKVVDVAMACVAPNSVNRPRMNEVVMELKQCLPMGKLESTSSGSIQIFSMGSISGLSSLER 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00284 476 PANTHER OS07G0107800 PROTEIN-RELATED 15 322 - -
Cca11g00284 476 ProSitePatterns Protein kinases ATP-binding region signature. 157 178 IPR017441 GO:0005524
Cca11g00284 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Cca11g00284 476 PANTHER TYROSINE KINASE FAMILY PROTEIN 387 474 - -
Cca11g00284 476 SUPERFAMILY Protein kinase-like (PK-like) 134 443 IPR011009 -
Cca11g00284 476 Pfam Protein tyrosine and serine/threonine kinase 153 321 IPR001245 GO:0004672|GO:0006468
Cca11g00284 476 Gene3D Phosphorylase Kinase; domain 1 132 224 - -
Cca11g00284 476 PANTHER TYROSINE KINASE FAMILY PROTEIN 15 322 - -
Cca11g00284 476 ProSiteProfiles Protein kinase domain profile. 151 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00284 476 Gene3D Ribonuclease Inhibitor 3 76 IPR032675 -
Cca11g00284 476 PANTHER OS07G0107800 PROTEIN-RELATED 387 474 - -
Cca11g00284 476 Gene3D Transferase(Phosphotransferase) domain 1 225 333 - -
Cca11g00284 476 Gene3D Transferase(Phosphotransferase) domain 1 370 458 - -
Cca11g00284 476 SMART serkin_6 151 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00284 476 SUPERFAMILY L domain-like 16 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00284 Cca-Chr11 3542527 3551743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00284 9 468 Receptor kinase-like Gene Family AT1G51830 44.421 3.16e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca11g00284 PK_Tyr_Ser-Thr 2.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00284 - - gmx:102663143 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00284 11 3542527 3551743 Cca11g00284 11 3542527 3551743 ECH