Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00279 ATGGCGGCGGCGCCGGGAAACGCAATGATGGAGGGAGGAGCGGTGGCGCAGCCTCCGGGAACCGACATGACCGGAATATGCTTCCGGGACCAGCTATGGCTGAACAGCTTCATTCTGGATCGGAACTTGGTGTTCGATTACTTCGCGCTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACCTCTCTCAGCTCTCGAAGATGACGGGCACGGAGTACGTGCTGAGCGAAGTTATGGAGCCGCACCTCTTCGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAGGTTACTCCTATGCTCGCCTATTACGTCCTTGACGGTTCTATTTACCAGGCTCCGCAGCTATGCAATGTCTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAAGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGGGTCAGCTGATTCTGAAAATGAGACGGCATTGCCGGAATCTAAGACTGTTAAGGAGACAATCGACATAAAGGAGGTTAAGCGGGTGGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCAGCATTTCCAGAAGGGACCAGCAAAAAGAATGAAATTTTGATACGAAAGGCATACTTAAATCGCTTGGGGAAAAGTATATTATTCCTTACAGAAACTTGGCGAGCTGCGGCATCTGTTGTGTTTTAA 744 0.5067 MAAAPGNAMMEGGAVAQPPGTDMTGICFRDQLWLNSFILDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYVLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSADSENETALPESKTVKETIDIKEVKRVDHILASLQRKLPPAPPPPAFPEGTSKKNEILIRKAYLNRLGKSILFLTETWRAAASVVF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00279 247 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Cca11g00279 247 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Cca11g00279 247 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 16 213 - -
Cca11g00279 247 PANTHER MED-6-RELATED 16 213 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Cca11g00279 Med6 1.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00279 K15128 - gmx:100792248 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00279 11 3501332 3505884 Cca11g00279 11 3501332 3505884 ECH