Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00266 ATGGGGAAAGCTAGCAGGTGGTTGAAAGGGTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCTAAGCCAGGGAAAGATGTGGATGTCCCTGCCACAGATAACACCTGGCTCAGATCCTATATTGCTGAGACAGAGAATGAACAGAACAAGCATGCAATTGCCGCGGCCGTGGCGGTTGTCAGGCTCACAAGCCAGGGTAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCAGCTGTGAAGATCCAAACTTTCTTTAGAGGCTATTTGGCGCGGAAGGCTCTTAGAGCACTGAAGGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATACGAGCTCAAACTGCTGTTAGAACACAACGAGCTCGTCGTTCCATGAGCAAAGAAAACAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGGTTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTAGCTTCATCCTATGAAACATCCTTGAATGGTTTTGATGGAAGCCCCAAGATTGTTGAAATTGACACATACAAGACCCGATCAAGGTCTAGGCGTTTTACCTCAACAATGTCTGAGTGTGGAGAAGACATGTCATGTCACGCAATCTCATCCCCTCTTCCTTGTCCAGTCCCTGGTAGAATCTCAGTTCCTGATTGCAGACATCTTCAAGAATTTGATTGGTATTTCAACGTTGACGAGTGCAGATTCAACACTGCTCATAGCACTCCACGTTTCACAAACTGTGCAAGGCCTAATGCTCCAGCCACACCAGCCAAGAGTGTTTGTGGTGACACCTTCTTCAGACCTTGCACCAATTTCCCCAACTACATGGCCAACACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCTGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTCCAGACTCAAGAATCCTGGAATTTTTGA 1131 0.4598 MGKASRWLKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPGKDVDVPATDNTWLRSYIAETENEQNKHAIAAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSMSKENRFLPEVLARKSVERFDETRSEFHSKRLASSYETSLNGFDGSPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCHAISSPLPCPVPGRISVPDCRHLQEFDWYFNVDECRFNTAHSTPRFTNCARPNAPATPAKSVCGDTFFRPCTNFPNYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNEMMAARNSISGVRMQRPSSNFFQTQESWNF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00266 376 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Cca11g00266 376 Pfam IQ calmodulin-binding motif 122 136 IPR000048 GO:0005515
Cca11g00266 376 Gene3D - 54 121 - -
Cca11g00266 376 MobiDBLite consensus disorder prediction 10 36 - -
Cca11g00266 376 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 374 - -
Cca11g00266 376 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Cca11g00266 376 MobiDBLite consensus disorder prediction 1 36 - -
Cca11g00266 376 PANTHER IQ-DOMAIN 5-RELATED 1 374 - -
Cca11g00266 376 SMART iq_5 94 116 IPR000048 GO:0005515
Cca11g00266 376 SMART iq_5 117 138 IPR000048 GO:0005515
Cca11g00266 376 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Cca11g00266 376 Pfam Protein of unknown function (DUF4005) 294 356 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00266 Cca-Chr11 3311765 3314037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00266 1 360 IQD Protein Family AT3G16490 50.636 4.04e-110 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00266 - - gmx:100797686 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00266 11 3311765 3314037 Cca11g00266 11 3311765 3314037 ECH
Cca10g00223 10 2374193 2376259 Cca11g00266 11 3311765 3314037 PCT