Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00264 ATGTGGCAAAGAAACCATAAGTCTTCAGAGGAGAGGAAGTTGGAGCTTAGGCTAGGTCCACCTGGTGAAGAGTCTCCCAATGAAAGCATCAAAAAATGCAACAGGGAAAGAAATGAATCATCACTCACTCTTGGTTACTTCTCAACTCAAAAAATTTCCTCTTCTGACAAGCCAGGTCCAGGTGGGGCTATGTTGCCCTCTGCATGGCCTTCCACATCCTACCACCAACACCAGCCTAAAGCCAAAGCTTCATTTCTTCAGCTCCAATCATGCCCCAAAAACATGATAGTGATGGGAAAGGATGTGCCACAACTCTGTTGTGTGGAGAACAAGACATTCTCACCCTCTTCTGCAAATACAGCTGTGTCCAAAAGAACGGCTTCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCACTTCTAAGCTGCCTTCTGGGTCCCACCAACATCAACATGTTGTTAAGGACAAGGTTGCTGGCAAGAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGACGGTGTTCCCATTGGAAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGAGGCCTCCTAGTAGAGTTAAATTTATCTCACGTTGGCTCTTCTAGCTGCTATTCTGGTCAAAGAGATTCCTGTGCTGGTGGAAATCAAAACAAGGAAGAGGAAAAGAAAGCCAATACGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTAGGAGATGTACCGTGGCACATGTTTGTGTCGACAGTGAAGAGGGTGAGGGTGTTGAAGAGATCTGATCTTCCTGCTTTTACCCATAGTAGTAAGCAAAACTAG 921 0.4473 MWQRNHKSSEERKLELRLGPPGEESPNESIKKCNRERNESSLTLGYFSTQKISSSDKPGPGGAMLPSAWPSTSYHQHQPKAKASFLQLQSCPKNMIVMGKDVPQLCCVENKTFSPSSANTAVSKRTASGPVVGWPPIRSFRKNIASGSTSKLPSGSHQHQHVVKDKVAGKNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDELFRGLLVELNLSHVGSSSCYSGQRDSCAGGNQNKEEEKKANTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRVRVLKRSDLPAFTHSSKQN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00264 306 MobiDBLite consensus disorder prediction 223 249 - -
Cca11g00264 306 Pfam AUX/IAA family 14 296 IPR033389 -
Cca11g00264 306 MobiDBLite consensus disorder prediction 1 19 - -
Cca11g00264 306 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 305 IPR003311 GO:0005634|GO:0006355
Cca11g00264 306 Gene3D - 170 304 - -
Cca11g00264 306 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 305 - -
Cca11g00264 306 MobiDBLite consensus disorder prediction 1 75 - -
Cca11g00264 306 ProSiteProfiles PB1 domain profile. 175 293 IPR000270 GO:0005515
Cca11g00264 306 SUPERFAMILY CAD & PB1 domains 169 290 - -
Cca11g00264 306 MobiDBLite consensus disorder prediction 223 237 - -
Cca11g00264 306 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00264 Cca-Chr11 3258464 3263509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00264 179 300 B3 DNA Binding Superfamily AT4G23980 27.869 1.31e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca11g00264 AUX_IAA 3e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00264 K14484 - gmx:100793822 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00264 11 3258464 3263509 Cca10g00221 10 2342194 2346338 ECH
Cca11g00264 11 3258464 3263509 Cca11g00264 11 3258464 3263509 ECH
Cca10g00221 10 2342194 2346338 Cca11g00264 11 3258464 3263509 PCT