Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00263 ATGATGACTCTGGTGCGAAAATCCCATTGGGGGTTGCTTCTCTATCTTCTCTTTCTGCTCCACCTTCACTGCAGCACCTGCTACCCCACAGAACCCATGAACTGTACGGACACAAGCCGCGTTTGCACTTCTTTCATGGCCTTCAAGCCCGAGGCGAACCACTCACTGGCTCTGATTCAGAGCATGTTTGATGTGTTGCCTGGTGACATCACAGTGGAAGGCAACGGGTGGGATTACCTGTTCGTAAGGAAGAACTGTTCTTGTGCTGCTGGTATCAAGAAGTACGTGTCCAACACCACATTCACTGTGAAATCCAATGAAGGGTTGGTGTATGATATGGTGATGGATGCCTATGACGGCCTTGCTTTTCTCCCCAACACCACCAGGAAGGCCAGGAATGGTGCTGTTGTGTCACTGAGGTTGTTCTGTGGCTGCTCCAGTGGACTGTGGAACTATTTGGTCAGTTATGTGATGAGAGACGGGGATAGTGTTGAGTCCTTGGCAAGTAGGTTTGGGGTTAGTATGGGTAGCATTGAGACTGTGAATGGCATTGGTAGTCCTGATAATGTCACTGTTGGCTCACTCTATTATATACCATTGGATTCAGTTCCTGGTGATCCTTATCCACTGAATAATGCAGCTCCACCAGCTCCTGTTCCTGCCCCATCCTTTGATAATTTTTCAGCTGATCAAGTCAATCATAAGGCTCATGTACCCTACGGATGGATCATTGGGGGTTTAGGAGTTGGCCTCTTTCTAATAATATTAACTGTGGTTCTCTGCATTTGTCTGAGATCATCAAATTGTTTTGCTGATGCCAGAACTGATGAGAAAAATGCTGAGAGCAAGATCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGACCAGAAGCAAACGGATGGTGAATCCAGCAATCACACGATTACCATTCCCAAAGCTTCAACTCTAGGGCCTGACGTATTTGACATGGATAAGCCTGTAGTTTTTAAATACGAAGATATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTTCTCGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACAAAAGAATTTATGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAGTTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCACAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAGATTGCGCTCGATACTGCTAGGGGCCTTGAATACATACATGAGCACACAAAAACTCATTATGTCCACCGAGATATCAAGACAAGTAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGATTAGCAAAACTTGTTGGGAAAGCAAATGAGGGAGAAATTTCAACAACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATATTTGAGTGACGGTCTTGCAACCACTAAGAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAGGGAGGCCATCATTCAATCAGAAGGCGCAATGACAAAAAATCCTGAAAGACGTTCACTGGCATCCATAGTAAGTTGTGCTTATAAGACATTGTTTTGGATGGCAGTTATACAAGCATATAGTTCTCCCTTGATTTACAGGAAAGATTGTAAGGGCTTGAGTAACTTGAGCAGTCACTTGTGA 1842 0.4283 MMTLVRKSHWGLLLYLLFLLHLHCSTCYPTEPMNCTDTSRVCTSFMAFKPEANHSLALIQSMFDVLPGDITVEGNGWDYLFVRKNCSCAAGIKKYVSNTTFTVKSNEGLVYDMVMDAYDGLAFLPNTTRKARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMGSIETVNGIGSPDNVTVGSLYYIPLDSVPGDPYPLNNAAPPAPVPAPSFDNFSADQVNHKAHVPYGWIIGGLGVGLFLIILTVVLCICLRSSNCFADARTDEKNAESKISHKFHILRNPSFFCGSGRYICGKHVDQKQTDGESSNHTITIPKASTLGPDVFDMDKPVVFKYEDIFSSTDGFSDSNLLGHGTYGSVYYSLLLDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDTARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIQSEGAMTKNPERRSLASIVSCAYKTLFWMAVIQAYSSPLIYRKDCKGLSNLSSHL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00263 613 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
Cca11g00263 613 PANTHER BNAA06G02020D PROTEIN 33 583 - -
Cca11g00263 613 SUPERFAMILY LysM domain 154 199 IPR036779 -
Cca11g00263 613 Pfam LysM domain 156 193 IPR018392 -
Cca11g00263 613 Gene3D Phosphorylase Kinase; domain 1 332 427 - -
Cca11g00263 613 Gene3D LysM domain 151 204 IPR036779 -
Cca11g00263 613 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 583 IPR044812 GO:0019199|GO:0045087
Cca11g00263 613 Pfam Protein tyrosine and serine/threonine kinase 360 556 IPR001245 GO:0004672|GO:0006468
Cca11g00263 613 SMART LysM_2 155 199 IPR018392 -
Cca11g00263 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Cca11g00263 613 CDD LysM 154 198 IPR018392 -
Cca11g00263 613 ProSitePatterns Protein kinases ATP-binding region signature. 362 383 IPR017441 GO:0005524
Cca11g00263 613 SUPERFAMILY Protein kinase-like (PK-like) 335 560 IPR011009 -
Cca11g00263 613 SMART serkin_6 356 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00263 613 Gene3D Transferase(Phosphotransferase) domain 1 429 600 - -
Cca11g00263 613 ProSiteProfiles Protein kinase domain profile. 356 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00263 Cca-Chr11 3220812 3228982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00263 31 582 Receptor kinase-like Gene Family AT1G51940 65.714 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca11g00263 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00263 - - gmx:100796989 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00263 11 3220812 3228982 Cca11g00263 11 3220812 3228982 ECH
Cca10g00220 10 2313958 2318790 Cca11g00263 11 3220812 3228982 PCT