Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00255 ATGCCGGTGCTGCGTAGTGGAGCGCgcaggggccgggcagcagcgaagcaagaacagcggcaccagcaggagcagAGTCcggtggtggagggggaggcgattgcgacgaggacgcgccggaggcgtgcggcggcggcggcagcggcagtgccagtgcccgtgcccctgccTAAGAGTaacaataacaataacaagcagcaacaacCGCACCAGGTGGTGGTGGTAAATGAGAACGTAGTTGTTGCGGCCAAGGAAGAAGAAGAGAATCGGGTATTGGAGGGTGGTGGAGCGGAGAAGGAAGAGGTAGCGGAGAAAGTGATGGATGGGCATGCCAGTGGTGGCCGGAGCAATGATAAGGCCAATGCAGGTGAAGATGACCCGAATACGCCTCAGATTCCTCAGAAGATTCAAGTAGGTAACTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAGGGAGGATTTGGTCAAGTATATGTTGGACGACGTACAACAGGTGGAAATTTGAATGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCATTAAAACTTGAGCACAGAACTAGTAAAGGATGTACCTACGGACCACCCTACGAGTGGCAAGTGTACAACACTCTCGGTGGCAGTCATGGTGTGCCTCAAGTACACTACAAGGGCCGACAGGGTGACTATTATGTCATGGTTATGGATATGCTGGGACCTAGCCTGTGGGATGTTTGGAATAATAACTCTCACACCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATCTCTATTTTGGAGAAAATGCACTCTCGAGGGTATGTGCATGGGGATGTAAAGCCCGAAAATTTTCTGCTCGGTGCTCCTAGCACACCTGACGAGAAAAGATTGTTCCTTGTAGATCTTGGATTAGCTACAAAGTGGAGGGACAGTACAACAGGCTTGCATGTGGAATATGACCAAAGGCCAGATGTTTTCAGAGGCACGGTCCGCTATGCTAGTGTGCATGCACATTTAGGAAGAACTGGAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTCCGAGGTCGCCTTCCCTGGCAGGGGTTCCAGGGAGAAAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGAGCCTATGTTGCTTTTGTCCCCTACCTTTTAAACAGTTTGTTGAACATGTTGTGAACTTAAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCAAACCCAGATATTAGGCCAATTAATACCGAGGGTGCACAAAAGCTTATTGGTCATAAGAGAGGCCGGTTGGTGATGGAAGAAGAGGACGATGAACAACCCAAAAAGAAGATTCGTATTGGATTGCCAGCATCCCAGTGGATAAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGATATCACTACAATGTATCAGATGGAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGTTTATATATTAGCAGTGTTGCTTCGTGTCAGAATGTATGGGCCTTAATCATGGATGCAGGGACAGGTTTCACTGCCCAAGTTTATGAACTCTCACCACTTTTTCTCCATAAGGAATGGATCATGGAGCACTGGGAAAAAAATTATTATATAAGCGCAATTGCTGGAGCTGCAAATGGGAGCTCGCTAGTAGTAATGTCTAAGGGCACACAGTATATGCAACAATCATACAAAGTTAGTGATTCATTTCCTTTCAAGTGGATTAACAAAAAGTGGAGGGAGGGCTTTTATGTGACTGCAATGGCCACATCAGGGACGAGATGGGGAGTCGTTATGTCTCGTGGTGCAGGATTTTCAGACCAGGTGGTCGAACTAGATTTTCTCTATCCCAGTGAAGGGATTCATAAGCGATGGGATTGCGGGTATCGAATCACTGCTACTGCTGCAACTCTGGACCAAGCTGCTTTCGTCCTGAGTGTGCCAAGGAGGAAACCCTTGGATGAAACTCAGGAAACACTTAGAACATCTGCTTTTCCTAGCACACACGTAAAGGAGAAGTGGGCAAAGAACCTCTACATTGCTTCTATTTGCTACGGACGTACAGTTTCTTGA 2127 0.4184 MPVLRSGARRGRAAAKQEQRHQQEQSPVVEGEAIATRTRRRRAAAAAAAVPVPVPLPKSNNNNNKQQQPHQVVVVNENVVVAAKEEEENRVLEGGGAEKEEVAEKVMDGHASGGRSNDKANAGEDDPNTPQIPQKIQVGNSPWYKVERKLGKGGFGQVYVGRRTTGGNLNERTGPGAVEVALKLEHRTSKGCTYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGAPSTPDEKRLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTSPESLCCFCPLPFKQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLVMEEEDDEQPKKKIRIGLPASQWISVYNARRPMKQRYHYNVSDGRLSQHIEKGNEDGLYISSVASCQNVWALIMDAGTGFTAQVYELSPLFLHKEWIMEHWEKNYYISAIAGAANGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWREGFYVTAMATSGTRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITATAATLDQAAFVLSVPRRKPLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00255 708 MobiDBLite consensus disorder prediction 1 72 - -
Cca11g00255 708 ProSitePatterns Protein kinases ATP-binding region signature. 150 183 IPR017441 GO:0005524
Cca11g00255 708 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 ISOFORM X1 104 683 - -
Cca11g00255 708 CDD STKc_CK1 144 420 - -
Cca11g00255 708 Gene3D Transferase(Phosphotransferase) domain 1 109 463 - -
Cca11g00255 708 ProSiteProfiles Protein kinase domain profile. 144 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00255 708 MobiDBLite consensus disorder prediction 56 72 - -
Cca11g00255 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Cca11g00255 708 Pfam Protein kinase domain 144 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00255 708 SUPERFAMILY Protein kinase-like (PK-like) 144 424 IPR011009 -
Cca11g00255 708 PANTHER CASEIN KINASE-RELATED 104 683 - -
Cca11g00255 708 MobiDBLite consensus disorder prediction 11 25 - -
Cca11g00255 708 SMART serkin_6 144 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00255 708 MobiDBLite consensus disorder prediction 108 140 - -
Cca11g00255 708 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00255 Cca-Chr11 3089959 3096583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00255 144 302 EF-hand Containing Proteins AT4G36070 29.341 3.95e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Cca11g00255 Pkinase 8.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00255 - - gmx:100799630 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00255 11 3089959 3096583 Cca11g00255 11 3089959 3096583 ECH