Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00250 ATGTCCTGCAAGGATGGTAGCAAAATCGGAATGGATAACGGAAAGTATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTGGAGCGGCTCTATCACGATTGCCCTAAACCCAGTTCCATTCGCCGCCAGCAGCTCATACGCGAGTGCCCCATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAAAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGGTGTAAATAGGAAGTTGACTGCGATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTCTCTCAACTGGTGTATGAAAATGGTTATTTTCGCCAACACACCCAAAATACTACGCAGGCAACCAAAGACACAAGCTGTGAATCGGCTGTGACGAGTGGTCAGCACAATTTGACAACTCAACATCCCCCACGGGATGCGAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTCTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCGCTGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGATTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTGAAAAATACTCAGAATGGTCCTAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGGTACCTGGTCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCTTGGAGTGTGCCAGAGGTGCTACGTCCACTGTATGAATCATCAACAGTTCTGGCTCAAAAGACAACTATGGCGGCCCTGCGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCAGCAGCTCTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACTGATGAGGGATGGACAACGATCGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCTTTTGCCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCAATGCTATTACAGAATGTGCCCCCAGCCATTCTCCTAAGGTTCCTGCGGGAGCATAGATCGGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCTTATCTGGATCCCGTGTTGGAAATTATGGAGGTCAAGTTATACTCCCTCTAGCACACACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACACAATAATGCCCAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCTCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCCCTTGATGTTGGCCCCAGTGGAAACCGAGCTTCGAATGAATATGCTGGAAATTCCGGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGTCAATATGTTCGGAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCATCTCATTTGAGTTCACATGCAGGGCTTAGGACACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTGGAGCTACTAAAATCTAATAACGAGGGGAACGAATCTGTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGTACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGATATGCTGGAGACCACCCTAGTTGCATTACAGGATATTACTTTAGAGAAAATATTTGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTGTCTCGTACGAGAGAGTTGTTGCATGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAATTGGTCTTTTGTTTGA 2511 0.4652 MSCKDGSKIGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTQATKDTSCESAVTSGQHNLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCAGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRASNEYAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESVLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSFV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00250 836 MobiDBLite consensus disorder prediction 120 148 - -
Cca11g00250 836 CDD bZIP 67 106 - -
Cca11g00250 836 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Cca11g00250 836 Coils Coil 84 111 - -
Cca11g00250 836 MobiDBLite consensus disorder prediction 120 151 - -
Cca11g00250 836 CDD START_ArGLABRA2_like 153 368 - -
Cca11g00250 836 CDD homeodomain 15 75 IPR001356 GO:0003677
Cca11g00250 836 Gene3D - 8 81 - -
Cca11g00250 836 SMART HOX_1 12 78 IPR001356 GO:0003677
Cca11g00250 836 ProSiteProfiles START domain profile. 149 363 IPR002913 GO:0008289
Cca11g00250 836 SUPERFAMILY Bet v1-like 158 368 - -
Cca11g00250 836 SUPERFAMILY Bet v1-like 395 594 - -
Cca11g00250 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 836 IPR044830 GO:0003700
Cca11g00250 836 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Cca11g00250 836 SMART START_1 158 368 IPR002913 GO:0008289
Cca11g00250 836 Gene3D - 194 374 IPR023393 -
Cca11g00250 836 Pfam START domain 159 367 IPR002913 GO:0008289
Cca11g00250 836 Pfam MEKHLA domain 693 835 IPR013978 -
Cca11g00250 836 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Cca11g00250 836 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00250 Cca-Chr11 3043152 3050896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00250 1 788 Homeobox Transcription Factor Family AT1G52150 85.190 0.0 1406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca11g00250 START 7.5e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00250 K09338 - gmx:100800165 1640.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00250 11 3043152 3050896 Cca11g00250 11 3043152 3050896 ECH
Cca10g00210 10 2205556 2212475 Cca11g00250 11 3043152 3050896 PCT