Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00241 ATGTCAACACAATTGGAACATGATTACATAGGCTTAACAGAGGGTCCATCCATGGAGAAAAGCTGTGACAAGATATCCTCTTCAGTCTCCTCCAACCTCTCCTCTGAGGATGAGAACACTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGTCTGCCAGGTTGTGGTGAGTCTCCTGAGAACAACAACtcaggatcaggttcaggttcaggttcaggttcaggtgcaggGATCTCTCTTTTTGGCAAGGATTTGCAGAAGAAGCATAGTGGCTATTCTGCTTCTTCCAAGAACCTCAAGAGGGGCTTCTCCGATGCCATTAGCTCTTCCTCTTCTTCTGGCAGATGGATCTTCTCAGCCAGTGATGATGCAACGGATGAGGCTGATTTTGGAAATGCTTCTGCAAGATGCAACAAAGAGGTTGCTATGGTCCCTCTTCCTCACTCTGAGAAGCCACCTCAGGTTGCTGCAATCAATGACCATGCCACTGCTCCTGCTGCAAAAGCACAAGTTGTGGGGTGGCCACCAATTCGATCTTTTCGTAAGAACACGATGGCGTATAATGTGGCAAAAATGAATAACGAAGGTGAGGTTGGTTGTCTGTATGTGAAGGTGAGCATGGATGGTGCACCATATCTCAGAAAGGTTGACCTGAAAACCTACACCAACTATATTCAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGTGGTTGTGGTGCAGTTCCAGGGGAAGAGGGATTAAGTGAGAGTGCTTTCAGGGATCTTGTTCATGGCTCTGAGTATGTTCTTACATATGAAGATAAGGATGGAGATTGGATGCTCATGGGTGATGTCCCTTGGGAGATGTTCACTGAGTCATGCAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATCGGGCTAGCTCCAAGGGCCATGGAAAAATGTAGGAGCCAAAACTAG 969 0.4417 MSTQLEHDYIGLTEGPSMEKSCDKISSSVSSNLSSEDENTSSLNFKETELRLGLPGCGESPENNNSGSGSGSGSGSGAGISLFGKDLQKKHSGYSASSKNLKRGFSDAISSSSSSGRWIFSASDDATDEADFGNASARCNKEVAMVPLPHSEKPPQVAAINDHATAPAAKAQVVGWPPIRSFRKNTMAYNVAKMNNEGEVGCLYVKVSMDGAPYLRKVDLKTYTNYIQLSSALEKMFSCFTIGQCGCGAVPGEEGLSESAFRDLVHGSEYVLTYEDKDGDWMLMGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKCRSQN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00241 322 PANTHER AUXIN-RESPONSIVE PROTEIN 4 314 - -
Cca11g00241 322 Pfam AUX/IAA family 47 313 IPR033389 -
Cca11g00241 322 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 314 IPR003311 GO:0005634|GO:0006355
Cca11g00241 322 MobiDBLite consensus disorder prediction 59 77 - -
Cca11g00241 322 Gene3D - 196 315 - -
Cca11g00241 322 MobiDBLite consensus disorder prediction 20 47 - -
Cca11g00241 322 SUPERFAMILY CAD & PB1 domains 199 303 - -
Cca11g00241 322 ProSiteProfiles PB1 domain profile. 202 304 IPR000270 GO:0005515
Cca11g00241 322 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00241 Cca-Chr11 2914392 2917053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00241 204 320 B3 DNA Binding Superfamily AT1G30330 28.205 3.18e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca11g00241 AUX_IAA 1.8e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00241 K14484 - gmx:100804782 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00241 11 2914392 2917053 Cca11g00241 11 2914392 2917053 ECH