Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00238 ATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTTTGATCCCTCCCCAGTACGTGCTTGGATCTTCTTCAATTCCTTTTAATTCTTCCACACAAAACCCAGAACCCCCTCAGTCATTGAGCCAACTTCTCTTCACTGGTTTGCCAGGAGAGGAAGAGAGAGTTGCATTCAGTCATTTTCAATCAAAAAAGTTGGATGGCTGGGATGAACATATGCTTAATCCATCCCCCATATCTCCTATGGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGAAACTTATATCATCACCATGGACATGATCAGGAGTTTCAGGTTTCTGGAGCACCTTGGTCACATAACATGGTGCCAGTTTCTTCTTCCCCTAGGTCTAGTGTTGCTAGCTTGAGTAGTAATAATTTATTGGATTTCACTTATAACAAGACAGATTATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATAGCGCAGCCAGTGGTGGAGTTTATAAGAAGACTAAGAGTCAGCCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACGGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGAGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGATAAGCCAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTGTCTTGCACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGACACCTGCATACGGCAGTGGATTTTAA 960 0.4385 MMAGNPNWWTMHPPSLIPPQYVLGSSSIPFNSSTQNPEPPQSLSQLLFTGLPGEEERVAFSHFQSKKLDGWDEHMLNPSPISPMVDVIKQEVSQSGNLYHHHGHDQEFQVSGAPWSHNMVPVSSSPRSSVASLSSNNLLDFTYNKTDYRKNQLPDHTSECNSAASGGVYKKTKSQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGNGSKNMRNPQSVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKDKPKDLRSRGLCLVPVSCTQHVGNENGADYWTPAYGSGF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00238 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 235 IPR036638 GO:0046983
Cca11g00238 319 CDD bHLH_AtbHLH_like 184 231 IPR045239 -
Cca11g00238 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Cca11g00238 319 MobiDBLite consensus disorder prediction 238 286 - -
Cca11g00238 319 MobiDBLite consensus disorder prediction 155 182 - -
Cca11g00238 319 PANTHER OS05G0228400 PROTEIN 19 306 - -
Cca11g00238 319 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 306 - -
Cca11g00238 319 Gene3D - 184 240 IPR036638 GO:0046983
Cca11g00238 319 MobiDBLite consensus disorder prediction 150 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00238 Cca-Chr11 2862049 2865427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00238 53 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 46.610 3.99e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00238 - - gmx:100802121 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00238 11 2862049 2865427 Cca11g00238 11 2862049 2865427 ECH