Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00232 ATGAGTCGCTCATTCAAGGCTTTCAACAAACACCTCACTCTTCTTCCTCTCCATCATCAACGCACTCCTTCCCATGCCTTCCTAGCTTCTCTCCCTCTCCTTTCCTACCCCAAGTCCTCTTTCTCTCTGTTTCGTCCACTTTCATCATCTGCACCTGCTACATTAATGGAGGTGGTCAAAGCAATTGCTAAGCAAGAACCTACAGTTCATGAAAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGCAACTCATTTCGTCAGCACAGAAGATATCTAATCTTTTGTGTGGCGGTGATGTGCAAGTGGGAAATCTCAGTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGTGTTGCTGTTCCGCTTGCAATCAGCTATCCAGAAGTAGAGCTCCTATATGTGATTCATAATTCGGATGTATCTGCAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCTCAGTTTTTCCATCTTCCACCTGTTCTCAACAAGTCTTTAGAGAAAAGCAGAGATGAACATTCACAGAATGGGGAAAATGGCACTGACAGAATTTTCTTAGATAATATTGGAAAATTGAGTGAGGATCCAGCACTGATTTTATACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCTTTTCCCAGGTCCAAACTTTGACAAAAGCGTGGGAGTACACATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCATGTTCACGGGCTTTTCAATGGTCTAATGGCCCCTCTCTATGCAGGTTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGGGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGAGGGTTCTAAGGCTGACGATGCTATTACTGTGTTCACTGGAGTTCCAACAATCTATGCCCGATTGATACAAGGTTATCATGCAATGGATCATGAGCTACAAGCTGCTTCGGCATCTGCTGCAAAGAACTTGCGACTTATGATGTGTGGGTCCTCTGCGCTTCCTCAACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCAAATCCATTGAAAGGTGAGCGCAAGCCAGGAACCGTTGGCAAACCATTTCCTGGTATACAGATCAAGATTATTGCAGATGAAGATGCCGGTGTGAATGAAAGTACTGGAACCGGTGAGCTTTGTGTAAAAAGCCCTTCATTGTTTAAAGAATATTGGAAGCTTCCTGAGGTGACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACCGGAGATGCAGTTACTACAGATGAAGATGGATATTACATCATTCTAGGACGTAAGGAAATTTATACTTCTCTGTGCATGCTGTCATATGTTTCTAGGAATTATCCTTGA 1506 0.429 MSRSFKAFNKHLTLLPLHHQRTPSHAFLASLPLLSYPKSSFSLFRPLSSSAPATLMEVVKAIAKQEPTVHESVAIRADQKSYSYKQLISSAQKISNLLCGGDVQVGNLSGARIGIVAKPSAEFVAGILGIWLSGGVAVPLAISYPEVELLYVIHNSDVSAILSTEDHSELMQSVANKSSSQFFHLPPVLNKSLEKSRDEHSQNGENGTDRIFLDNIGKLSEDPALILYTSGTTGKPKGVVHTHKSIFSQVQTLTKAWEYTSADQFLHCLPLHHVHGLFNGLMAPLYAGSTVEFLPKFSVRGVWQRWRESYPTEGSKADDAITVFTGVPTIYARLIQGYHAMDHELQAASASAAKNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIQIKIIADEDAGVNESTGTGELCVKSPSLFKEYWKLPEVTKESFTDDGFFKTGDAVTTDEDGYYIILGRKEIYTSLCMLSYVSRNYP 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00232 501 Pfam AMP-binding enzyme 71 484 IPR000873 -
Cca11g00232 501 CDD MCS 71 484 - -
Cca11g00232 501 ProSitePatterns Putative AMP-binding domain signature. 226 237 IPR020845 -
Cca11g00232 501 PANTHER ACYL-COA SYNTHETASE 48 484 - -
Cca11g00232 501 PRINTS AMP-binding signature 221 232 IPR020459 -
Cca11g00232 501 PRINTS AMP-binding signature 233 241 IPR020459 -
Cca11g00232 501 PANTHER MALONATE--COA LIGASE-LIKE 48 484 - -
Cca11g00232 501 Gene3D - 59 483 IPR042099 -
Cca11g00232 501 SUPERFAMILY Acetyl-CoA synthetase-like 45 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00232 Cca-Chr11 2811851 2819490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00232 221 483 Monolignol Biosynthesis Gene Families AT1G20510 27.341 5.26e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00232 K18660 - gmx:100813324 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00232 11 2811851 2819490 Cca11g00232 11 2811851 2819490 ECH