Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00229 ATGGCCGTCAACATGTCCAACAAACCACCTCACACCAAAGACTTTTTTCCCTCTCCAGCTCTCTCTCTTAGCCTTGCTGGAATTTTCCGGCATGCTGAGGCGGCGGCGGAGACGTCCGCCATGGAGGTGGTCGGCGATGAGCTCCGGCGAGAGGGCACTGTTGAGTTTAGCAGCGACAACTCAGCACCGGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGTTCATGAGATTgaagataacgacaaagacgacaaagatgatgataagagaagaaagaagaagaggaagaagTTTAACAGACACACTCCTGAACAGATCAGAGAAATGGAGGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAATCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTTCTTCGAGGCAAGTTAAGTTTTGGTTCCAAAATCGTCGAACACAAATCAAGACAATACAAGAGCGCCATGAAAATTCATTATTGAAGACGGAATTAGAGAGCCTAAGGGCAGAAAATAAGTCCATGCGGGAGACCATAAACAACTCTTCCTGCCCCAATTGTAGCACCGTAACGGCTAACCTACATGGCTCCATGTCCACAGAAAAACATCTTCTCATCGAAAATGCCAAACTCAAAATTGAGGTAGAGAAGCTGAGAACAGCATTAGGGAAATACTCACCAAGGACAACGTCTCCTTCATCTTCTGCTGGCCATGACGAGGAAGAGAATAGAAGCTCTTTGGATTTCTATAACGGAATTTTCGGGCTGGAGAAATCAAGGATAATGGATACAGTAAACCGAGCAACGGAAGAACTCATAAAGATGGCAAACATGGGGGAACCATTATGGCTTCGTAGCGTTGAGACAAGTCGCGAAATACTCAACTACGATGAATATGTGAAGGAGTTCGAAGTTGAAAATTCTTGCAGTGAAAGGCCAAACACATTTATCGAAGCCTCAAGAGAATCCGAGGTTGTTTTTGCGGATCTCTCACGACTTGTCCAATGTTTTCTTGATGTGAATCAATGGAAGGAGATGTTTCCGTGCTTAATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGCTCAAACAGGAACGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCTATGGTGCCCACAAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGCTGAAAAGTGGGCAATTATTGATGTATCCATAGACAAGGTAGAAGACAACATTGATGCATTCCTGGTGAAATGTAGAAAACGCCCATCTGGTTGTATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACATTGAGTGCCAAAAGAGCTCAATTCACGCATTGTATCGAGCCATTGTCAACAGCGGTCTAGCTTTTGGGGCAAGGCACTGGATGGCAACACTACAAGTTCAATGCGAACGTCTAGTTTTTTACATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACGATGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACGTGGAGTTTCTGCCATGCAGTTGGTGCATCAAGTTTCCATACATGGACCAAGGTCACAAGTAAAACAGGAGAAGATATAAGAATTAGCTCTAGAAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCCTATCAGCCGTTACTTCTGTGTGGCTTCCTGTTTCTCCCAATGTTCTGTTTGATTTCTTGAGAGATGAAGCTCATCGAAGTAAGTGGGATAGCAAGTCCAGTGGTGGGTCAGTGAAGTCCATTGCTAATTTAGCTAAAGGAAAAGACCGAGGCAATGTTGTAAATATACAAAAAATACAATCAAAAGGGAACAGTGTGTGGATATTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTATATACTCCTGTGGACATTGCTGGTATCAAATCTGTGTTGACAGGATGTGATTCAAGCAATCTTACTGTATTGCCTTCAGGATTCTCAATTGTTCCTGATGGTATTGAGGCAAGGCCATTTGTGATTACATCAAGGCAAGAAGAAAAGTACACAGAAGGAGGGTCTTTACTTACAATGGCATTTCAGATCCTTGCCAACCCTTCTACAACAACCAAGTTGATAGTGGAGTCTGTCGAATCCGCCAATAATCTTATCTCTTGTACGTTAAAAAATATTAGAACTAGTTTACAGTGTGAGGATGATTAG 2256 0.4251 MAVNMSNKPPHTKDFFPSPALSLSLAGIFRHAEAAAETSAMEVVGDELRREGTVEFSSDNSAPVRSRSEEDFDGEGVHEIEDNDKDDKDDDKRRKKKRKKFNRHTPEQIREMEALFKESPHPDENQRQQLSKQLGLSSRQVKFWFQNRRTQIKTIQERHENSLLKTELESLRAENKSMRETINNSSCPNCSTVTANLHGSMSTEKHLLIENAKLKIEVEKLRTALGKYSPRTTSPSSSAGHDEEENRSSLDFYNGIFGLEKSRIMDTVNRATEELIKMANMGEPLWLRSVETSREILNYDEYVKEFEVENSCSERPNTFIEASRESEVVFADLSRLVQCFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSAEKWAIIDVSIDKVEDNIDAFLVKCRKRPSGCIIEDKSNGHCKVIWVEHIECQKSSIHALYRAIVNSGLAFGARHWMATLQVQCERLVFYMATNVPMKDSTGVATMAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILSAVTSVWLPVSPNVLFDFLRDEAHRSKWDSKSSGGSVKSIANLAKGKDRGNVVNIQKIQSKGNSVWILQDSCTSAYESMVVYTPVDIAGIKSVLTGCDSSNLTVLPSGFSIVPDGIEARPFVITSRQEEKYTEGGSLLTMAFQILANPSTTTKLIVESVESANNLISCTLKNIRTSLQCEDD 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00229 751 MobiDBLite consensus disorder prediction 53 109 - -
Cca11g00229 751 Gene3D - 303 489 IPR023393 -
Cca11g00229 751 SUPERFAMILY Bet v1-like 259 490 - -
Cca11g00229 751 CDD START_ArGLABRA2_like 261 489 - -
Cca11g00229 751 Pfam START domain 269 490 IPR002913 GO:0008289
Cca11g00229 751 Gene3D - 82 167 - -
Cca11g00229 751 MobiDBLite consensus disorder prediction 64 93 - -
Cca11g00229 751 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Cca11g00229 751 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Cca11g00229 751 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Cca11g00229 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 749 IPR042160 -
Cca11g00229 751 SMART START_1 266 490 IPR002913 GO:0008289
Cca11g00229 751 MobiDBLite consensus disorder prediction 227 246 - -
Cca11g00229 751 ProSiteProfiles START domain profile. 257 493 IPR002913 GO:0008289
Cca11g00229 751 SMART HOX_1 96 159 IPR001356 GO:0003677
Cca11g00229 751 SUPERFAMILY Bet v1-like 512 713 - -
Cca11g00229 751 CDD homeodomain 103 153 IPR001356 GO:0003677
Cca11g00229 751 Coils Coil 161 181 - -
Cca11g00229 751 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Cca11g00229 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 14 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00229 Cca-Chr11 2767322 2773115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00229 56 750 Homeobox Transcription Factor Family AT1G79840 62.536 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca11g00229 START 2.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00229 K09338 - gmx:100806193 1257.66