LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00229	ATGGCCGTCAACATGTCCAACAAACCACCTCACACCAAAGACTTTTTTCCCTCTCCAGCTCTCTCTCTTAGCCTTGCTGGAATTTTCCGGCATGCTGAGGCGGCGGCGGAGACGTCCGCCATGGAGGTGGTCGGCGATGAGCTCCGGCGAGAGGGCACTGTTGAGTTTAGCAGCGACAACTCAGCACCGGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGTTCATGAGATTgaagataacgacaaagacgacaaagatgatgataagagaagaaagaagaagaggaagaagTTTAACAGACACACTCCTGAACAGATCAGAGAAATGGAGGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAATCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTTCTTCGAGGCAAGTTAAGTTTTGGTTCCAAAATCGTCGAACACAAATCAAGACAATACAAGAGCGCCATGAAAATTCATTATTGAAGACGGAATTAGAGAGCCTAAGGGCAGAAAATAAGTCCATGCGGGAGACCATAAACAACTCTTCCTGCCCCAATTGTAGCACCGTAACGGCTAACCTACATGGCTCCATGTCCACAGAAAAACATCTTCTCATCGAAAATGCCAAACTCAAAATTGAGGTAGAGAAGCTGAGAACAGCATTAGGGAAATACTCACCAAGGACAACGTCTCCTTCATCTTCTGCTGGCCATGACGAGGAAGAGAATAGAAGCTCTTTGGATTTCTATAACGGAATTTTCGGGCTGGAGAAATCAAGGATAATGGATACAGTAAACCGAGCAACGGAAGAACTCATAAAGATGGCAAACATGGGGGAACCATTATGGCTTCGTAGCGTTGAGACAAGTCGCGAAATACTCAACTACGATGAATATGTGAAGGAGTTCGAAGTTGAAAATTCTTGCAGTGAAAGGCCAAACACATTTATCGAAGCCTCAAGAGAATCCGAGGTTGTTTTTGCGGATCTCTCACGACTTGTCCAATGTTTTCTTGATGTGAATCAATGGAAGGAGATGTTTCCGTGCTTAATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGCTCAAACAGGAACGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCTATGGTGCCCACAAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGCTGAAAAGTGGGCAATTATTGATGTATCCATAGACAAGGTAGAAGACAACATTGATGCATTCCTGGTGAAATGTAGAAAACGCCCATCTGGTTGTATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACATTGAGTGCCAAAAGAGCTCAATTCACGCATTGTATCGAGCCATTGTCAACAGCGGTCTAGCTTTTGGGGCAAGGCACTGGATGGCAACACTACAAGTTCAATGCGAACGTCTAGTTTTTTACATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACGATGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACGTGGAGTTTCTGCCATGCAGTTGGTGCATCAAGTTTCCATACATGGACCAAGGTCACAAGTAAAACAGGAGAAGATATAAGAATTAGCTCTAGAAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCCTATCAGCCGTTACTTCTGTGTGGCTTCCTGTTTCTCCCAATGTTCTGTTTGATTTCTTGAGAGATGAAGCTCATCGAAGTAAGTGGGATAGCAAGTCCAGTGGTGGGTCAGTGAAGTCCATTGCTAATTTAGCTAAAGGAAAAGACCGAGGCAATGTTGTAAATATACAAAAAATACAATCAAAAGGGAACAGTGTGTGGATATTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTATATACTCCTGTGGACATTGCTGGTATCAAATCTGTGTTGACAGGATGTGATTCAAGCAATCTTACTGTATTGCCTTCAGGATTCTCAATTGTTCCTGATGGTATTGAGGCAAGGCCATTTGTGATTACATCAAGGCAAGAAGAAAAGTACACAGAAGGAGGGTCTTTACTTACAATGGCATTTCAGATCCTTGCCAACCCTTCTACAACAACCAAGTTGATAGTGGAGTCTGTCGAATCCGCCAATAATCTTATCTCTTGTACGTTAAAAAATATTAGAACTAGTTTACAGTGTGAGGATGATTAG	2256	0.4251	MAVNMSNKPPHTKDFFPSPALSLSLAGIFRHAEAAAETSAMEVVGDELRREGTVEFSSDNSAPVRSRSEEDFDGEGVHEIEDNDKDDKDDDKRRKKKRKKFNRHTPEQIREMEALFKESPHPDENQRQQLSKQLGLSSRQVKFWFQNRRTQIKTIQERHENSLLKTELESLRAENKSMRETINNSSCPNCSTVTANLHGSMSTEKHLLIENAKLKIEVEKLRTALGKYSPRTTSPSSSAGHDEEENRSSLDFYNGIFGLEKSRIMDTVNRATEELIKMANMGEPLWLRSVETSREILNYDEYVKEFEVENSCSERPNTFIEASRESEVVFADLSRLVQCFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSAEKWAIIDVSIDKVEDNIDAFLVKCRKRPSGCIIEDKSNGHCKVIWVEHIECQKSSIHALYRAIVNSGLAFGARHWMATLQVQCERLVFYMATNVPMKDSTGVATMAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILSAVTSVWLPVSPNVLFDFLRDEAHRSKWDSKSSGGSVKSIANLAKGKDRGNVVNIQKIQSKGNSVWILQDSCTSAYESMVVYTPVDIAGIKSVLTGCDSSNLTVLPSGFSIVPDGIEARPFVITSRQEEKYTEGGSLLTMAFQILANPSTTTKLIVESVESANNLISCTLKNIRTSLQCEDD	751

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g00229	751	MobiDBLite	consensus disorder prediction	53	109	-	-
	Cca11g00229	751	Gene3D	-	303	489	IPR023393	-
	Cca11g00229	751	SUPERFAMILY	Bet v1-like	259	490	-	-
	Cca11g00229	751	CDD	START_ArGLABRA2_like	261	489	-	-
	Cca11g00229	751	Pfam	START domain	269	490	IPR002913	GO:0008289
	Cca11g00229	751	Gene3D	-	82	167	-	-
	Cca11g00229	751	MobiDBLite	consensus disorder prediction	64	93	-	-
	Cca11g00229	751	ProSiteProfiles	'Homeobox' domain profile.	95	155	IPR001356	GO:0003677
	Cca11g00229	751	SUPERFAMILY	Homeodomain-like	92	156	IPR009057	-
	Cca11g00229	751	Pfam	Homeodomain	100	153	IPR001356	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g00229	Cca-Chr11	2767322	2773115	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g00229	56	750	Homeobox Transcription Factor Family	AT1G79840	62.536	0.0	882

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Cca11g00229		START	2.7e-54	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00229	K09338		-	gmx:100806193	1257.66

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