Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00223 ATGTCGTCGCCTTTGCCCGCGATTTCTCCCGCCACTAACTCCACCGCCTCTCCTCCGCCGTCGGCGACCTCTCCCGCCACTGTCTCCCCTCCTCCGCCTCCCGACGCCACCAATGCCGCCGCTTCTCCGCCGGCGCCGGCGGTGGCCGCCACTCCGCCCAATCATGATGACGGGATGCCGAGGGGTACATTGAACGGAATAATTATAGGCGTCGTTTTAGGTTCGGTAGGTATGCTTATCATTGGAGGTATTTTCTTCTGTTTGTATAGGAATTGGAAAAGGAAGAGAGGCCACAACAATAACTACTCGCAACCGCCACAACCCAAAGCTGACATAGCTGGTGGCATAGTTCAGCATTGGCAAGACAGTGTTCCTCCAACGACAGATGGTAAAGAAGGCTTGCCGCTCAAGCCTCCTACAGGGGCTTTATTAAATCCAAAACAGTCATCTGCTGGTCTCCCCACACCTGCTGTGAATTCTTCGAGCACTAGTAGTAGTTTGGGGTCTGAGAAGACAAAGCCATACATTTCCCCATCTCCTGCCATTTCCTTGGCGCTATCTCAAAGCACTTTTACATATAATGAATTGACTATGGCAACTGATGGATTCTCCAAATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAGGGGGAGCGTGAGTTCCATGCAGAAGTTGAGGTCATTAGCCGTGTGCATCACAGACATCTTGTTTCCCTAGTTGGATACTGCATCTCAGACAGCCAGAGGATGCTTGTCTATGAGTATGTGCCAAATAATACACTAGAATTTCATTTGCATGGAAAGGACATACCATGTATGGACTGGTCAACAAGGATGAAGATTTCTATAGGGTCTGCAAAAGGATTGGCATATCTGCATGAGGATTGTAATCCCAAAATCATACACCGTGACATCAAGGCATCTAACATCCTTATTGATGATAGTTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAATTTTCATCAGATACAGAAACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTCACTGAAAAGTCAGATGTTTTTTCCTTTGGTGTTGTCCTCTTGGAGTTGATTACTGGACGGAAACCTGTCGATAAAACTCAACCCTTCATAGACGACAGCATGGTTGAATGGGCAAGGCCTTTACTGTCCCAAGCTTTGGAAAATGGAAACTTTAATGGACTTGTTGATCCAAGATTGCAGACGAATTACAACCTAGACGAGATAATCCGAATGACTGCTTGTGCTGCAACTTGTGTGCGCCATTCAGCCAGGCTCCGTCCTCGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGACATATTTCTCTAGAAGATCTAAATAAGGGGAGCACACCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGATTTCTGGTTATGATAGTGTCCAATACTCAGAAGACCTAAAGAAGTTCAAGAAGCTGGCACTGGAAACCCAAGAGCAAGGCATTAGTGAGTACAGTGGTCCTAGCAGCGAGTATGGGCAACATCCATCCATCTCGACCAGTTCCGGCCAGCAAAATACGCAGGAAATGGAAACGGGGAATTTGAAGAGTAGCAACGGTGATTCTGCGATGAACTCTTGA 1722 0.4692 MSSPLPAISPATNSTASPPPSATSPATVSPPPPPDATNAAASPPAPAVAATPPNHDDGMPRGTLNGIIIGVVLGSVGMLIIGGIFFCLYRNWKRKRGHNNNYSQPPQPKADIAGGIVQHWQDSVPPTTDGKEGLPLKPPTGALLNPKQSSAGLPTPAVNSSSTSSSLGSEKTKPYISPSPAISLALSQSTFTYNELTMATDGFSKSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYCISDSQRMLVYEYVPNNTLEFHLHGKDIPCMDWSTRMKISIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTQPFIDDSMVEWARPLLSQALENGNFNGLVDPRLQTNYNLDEIIRMTACAATCVRHSARLRPRMSQVVRALEGHISLEDLNKGSTPGHSRVFGSFEISGYDSVQYSEDLKKFKKLALETQEQGISEYSGPSSEYGQHPSISTSSGQQNTQEMETGNLKSSNGDSAMNS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00223 573 MobiDBLite consensus disorder prediction 143 173 - -
Cca11g00223 573 MobiDBLite consensus disorder prediction 120 173 - -
Cca11g00223 573 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g00223 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Cca11g00223 573 ProSiteProfiles Protein kinase domain profile. 203 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00223 573 ProSitePatterns Protein kinases ATP-binding region signature. 209 231 IPR017441 GO:0005524
Cca11g00223 573 MobiDBLite consensus disorder prediction 528 573 - -
Cca11g00223 573 Gene3D Phosphorylase Kinase; domain 1 166 278 - -
Cca11g00223 573 MobiDBLite consensus disorder prediction 1 58 - -
Cca11g00223 573 MobiDBLite consensus disorder prediction 23 50 - -
Cca11g00223 573 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 549 - -
Cca11g00223 573 SUPERFAMILY Protein kinase-like (PK-like) 176 476 IPR011009 -
Cca11g00223 573 Gene3D Transferase(Phosphotransferase) domain 1 279 489 - -
Cca11g00223 573 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 8 549 - -
Cca11g00223 573 Pfam Protein tyrosine and serine/threonine kinase 206 475 IPR001245 GO:0004672|GO:0006468
Cca11g00223 573 SMART serkin_6 203 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00223 Cca-Chr11 2717606 2722663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00223 161 522 Trihelix Transcription Factor Family AT1G70460 62.125 1.85e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca11g00223 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00223 - - ccaj:109808169 1046.96