Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00221 ATGGGGAAGGGAACGGGGAGTTTTGGTAAGAGAAGGAATAAGACACACACCCTGTGTGTGAGGTGTGGCCGCCGCAGCTTCCACCTCCAGAAGAGTCGCTGCTCCGCGTGCGCTTTCCCCGCCGCGCGCAAGAGGAAATATAACTGGAGCGTGAAGGCCATTAGGAGAAAGACCACTGGGACTGGAAGGATGAGGTACTTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCAAGGAAGAGAGGAGCAGCTGCCAGTGCCTAA 288 0.5729 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKRGAAASA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00221 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Cca11g00221 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Cca11g00221 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Cca11g00221 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Cca11g00221 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Cca11g00221 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 95 - -
Cca11g00221 95 PANTHER RIBOSOMAL PROTEIN L37 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00221 Cca-Chr11 2675309 2676360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00221 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.368 5.46e-58 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00221 K02922 - csv:101221537 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00221 11 2675309 2676360 Cca11g00221 11 2675309 2676360 ECH