Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00213 ATGGAATCAAGCAAGATGACTGTGTTTCTTTATCCTTCATTTGTACTACTCCTTCCCTTCCTAGTCCTAGCCATAGCCCTCATCCTACCAAACACTAATGCTGATAACATTGCCATTTATTGGGGTCAAAACAGTGGTGAGGGAAGCTTAAGAGAAACATGTGAAACTGGGCACTACTCCTTTGTAAACATAGCCTTTGTTAACAAATTTGGAAATGGTCAATCACCTACACTCTTCCTTGCCCATTGTGACCCTGTTATGGGCAATTGCTTTTCAATTGCCAGAGACATCAAAAGTTGCCAAAAACAAGGGATAAAGGTGATGCTATCAATAGGAGGTGCAAGTTTTAGTTACTCTCTTACTTCTAATGATGATGCTAAAAATGTTTCTTATTATTTATGGCACAATTTCTTGGGTGGAAACTCATCTTCACGCCCACTTGGAGATGCCATATTAGATGGCATAGATTTTGCAATAGGGGGGTCCCCTTCCACACAACATTGGGAAGACCTTGCACATCACCTTAAGTCACATAGCACAAGAAGAAAAAAAGTCTACTTAAGTGCAGCACCTCAATGCTTATTTCCTGATAGTACACTTGACATAGCCCTTCAAACAGGACTTTTTGATTATATTTGGGTACAATTCTACAATAATCCCATTTGCCAATATAGCAAAGCAACTGTAAGTGGCTATGTTCCAATTGATTTGTTGACCTCTGAAATCATTGATGTTATAAGAATGTCTTCCAATTATGGAGGGGTGATGCTTTGGTCAAGGAACAACTGTTCCTGTAATGCTTATGCTCCGTTAAACTTTGTTAATAATACTGGATGCCAATTATGGAGTAAAGGAGCAAGGTTTATTAAAGGTTCCACCACACATTTGCAGCGAGTTTACTTTGTCAAACAAAAAGTAACAGTAAATAATAAGTGGTGGACATGGCTTATCATTGGCATTGGAGTAGCTATTGCAATACCTTCATTCTGTTACTTATACTTTGTTTTAAGGAGACGATACAAAGCTGAAGTGGATAGAAAAATGAGGCAAATGAAATTGTTGACCGAGGTTGGAGGTAATGCATTGGGAAACTATGGCAAAGCCAAAAAGACTATGAAAGATGGAAAGACAGCTAATGAGATTGAGATATTCAATTTGGAATATATCATTGCTGCCACAAACAATTTCTCTCTTGATAATAAGCTAGGAGAGGGTGGTTTTGGTCCTGTCTATAAGGGAAACTTAATTGATGGACAAGAAATTGCAATAAAAAGACTTTCTAAAAGTTCAGGCCAAGGGCTAACAGAGTTCAAGAATGAAGCTAAGATTATGGCCAAGCTTCAACACACTAATCTTGTGAGGCTTTTGGGATTCTGCATCCAAAGAGATGAAAGAATTCTAGTTTATGAGTACATGTCCAACAAAAGCTTGGACTTTTATTTGTTTTATGAAAGTAGAAAGAATGTGCTAGATTGGAAAAAACGTTTCAACATCATTGAAGGCTTGGCAACTATGAAATAG 1521 0.3767 MESSKMTVFLYPSFVLLLPFLVLAIALILPNTNADNIAIYWGQNSGEGSLRETCETGHYSFVNIAFVNKFGNGQSPTLFLAHCDPVMGNCFSIARDIKSCQKQGIKVMLSIGGASFSYSLTSNDDAKNVSYYLWHNFLGGNSSSRPLGDAILDGIDFAIGGSPSTQHWEDLAHHLKSHSTRRKKVYLSAAPQCLFPDSTLDIALQTGLFDYIWVQFYNNPICQYSKATVSGYVPIDLLTSEIIDVIRMSSNYGGVMLWSRNNCSCNAYAPLNFVNNTGCQLWSKGARFIKGSTTHLQRVYFVKQKVTVNNKWWTWLIIGIGVAIAIPSFCYLYFVLRRRYKAEVDRKMRQMKLLTEVGGNALGNYGKAKKTMKDGKTANEIEIFNLEYIIAATNNFSLDNKLGEGGFGPVYKGNLIDGQEIAIKRLSKSSGQGLTEFKNEAKIMAKLQHTNLVRLLGFCIQRDERILVYEYMSNKSLDFYLFYESRKNVLDWKKRFNIIEGLATMK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00213 506 Pfam Glycosyl hydrolases family 18 37 218 IPR001223 GO:0005975
Cca11g00213 506 PANTHER ENDOCHITINASE 227 483 - -
Cca11g00213 506 PANTHER OS01G0691000 PROTEIN 227 483 - -
Cca11g00213 506 PANTHER OS01G0691000 PROTEIN 15 227 - -
Cca11g00213 506 ProSiteProfiles Protein kinase domain profile. 396 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00213 506 SMART tyrkin_6 396 505 IPR020635 GO:0004713|GO:0006468
Cca11g00213 506 SUPERFAMILY (Trans)glycosidases 32 268 IPR017853 -
Cca11g00213 506 Pfam Protein tyrosine and serine/threonine kinase 397 498 IPR001245 GO:0004672|GO:0006468
Cca11g00213 506 CDD GH18_hevamine_XipI_class_III 36 260 IPR045321 -
Cca11g00213 506 SUPERFAMILY Protein kinase-like (PK-like) 381 503 IPR011009 -
Cca11g00213 506 Gene3D Phosphorylase Kinase; domain 1 369 471 - -
Cca11g00213 506 Gene3D Glycosidases 31 270 - -
Cca11g00213 506 PANTHER ENDOCHITINASE 15 227 - -
Cca11g00213 506 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 35 292 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00213 Cca-Chr11 2621718 2624509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00213 37 260 Glycoside Hydrolase AT5G24090 51.751 3.22e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g00213 Glyco_hydro_18 1.7e-21 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00213 K01183 - adu:107464041 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00213 11 2621718 2624509 Cca11g00213 11 2621718 2624509 ECH