Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00206 ATGCCACGAAACAAGATCCCAAAAGCTCTTCGAGAGTACCTCTCGAAGATGAAAAGCCCCCACCGTTCACCGATCCACTTACCCTCCAAGAAATGGATGGTGGCAGGGTGCAAGCATCCTAGGACCCATTCCATCGACATGGACAAAGCCACCACCAACAACGTCAAAGACGACGAAGCCATGCTAGCCGACATCGACCGTTTCCTCTTCGAGAATTTCAAGTCCCTCTTCCTCGAAGATCTCGACGACTCCAACAGCAGCGACAACAGCCGCCACGGAGCCAAGTCTCCGGAACTCTGCCCCATCAGGTTCGACTCTTCTACAAGGTTCCACGACTTTCATCCCGCCCTCTTCACGGAGACCACCACGGAAGGCGGCTCCAGCTCCACCGCGTCCGAAAACGAGGGCGGAGAGGACCTCATGCTGCTCCCCACCAACTGCGTGGTGGTCCTGGCCAACTCCGCCAGCCCCAGTGAGGATTTCCGGCGATCCATGGAAGGCGTGGTGGAATCCAGAATAAGGAACCAGGAGAAGGTGGATTGGGACTTCATGGAGGAGCTTCTGTACTGTCACATGAACCTTAACCACAAGAAGACCCACAAGTACATTCTCAATGCCTTCGTCGACGTCGTCACCGCCATGCGCGCCCAACCGGAGTCTCCCGACCGACCTAAAGAGATAACTCCGGCAAAGCCCAAGCCACGAAGCGTTCGAACAGTTAAGATTGGAAGGGAGGTGCGGAAGAAGACATAG 753 0.5564 MPRNKIPKALREYLSKMKSPHRSPIHLPSKKWMVAGCKHPRTHSIDMDKATTNNVKDDEAMLADIDRFLFENFKSLFLEDLDDSNSSDNSRHGAKSPELCPIRFDSSTRFHDFHPALFTETTTEGGSSSTASENEGGEDLMLLPTNCVVVLANSASPSEDFRRSMEGVVESRIRNQEKVDWDFMEELLYCHMNLNHKKTHKYILNAFVDVVTAMRAQPESPDRPKEITPAKPKPRSVRTVKIGREVRKKT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00206 250 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 148 214 IPR006458 -
Cca11g00206 250 ProSiteProfiles OVATE domain profile. 150 213 IPR006458 -
Cca11g00206 250 MobiDBLite consensus disorder prediction 217 250 - -
Cca11g00206 250 MobiDBLite consensus disorder prediction 219 243 - -
Cca11g00206 250 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 231 IPR038933 GO:0045892
Cca11g00206 250 Pfam Transcriptional repressor, ovate 154 214 IPR006458 -
Cca11g00206 250 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 3 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00206 Cca-Chr11 2558950 2560118 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca11g00206 Ovate 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00206 - - ccaj:109806833 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00206 11 2558950 2560118 Cca11g00206 11 2558950 2560118 ECH
Cca10g00165 10 1804287 1805557 Cca11g00206 11 2558950 2560118 PCT