Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00205 ATGAGCGTGGTGGGTTTCGATTTCGGTAACGAGAGTTGCATTGTGGCGGTTGCGAGGCAGAGAGGGATTGATGTTGTGCTCAATGATGAGTCCAAGCGTGAAACGCCGGCTGTTGTGTGCTTTGGTGAGAAGCAACGCTTCATTGGCACTGCTGGTGCTGCTTCCACTATGATGAACCCTAAGAATTCGATTTCACAGATTAAGAGACTCGTTGGGAGGAAATTCGCTGATCCTGAATTTCAGAGGTATCTTAAGTCATTGCCATTTGTTGTTACTGAGGGTAATGATGGATACCCGCTGATTCATGCGCGCTACTTGGGTGAGGCGAAGACTTTTACGCCTACCCAAGTGTTTGGGATGATGCTGTCGAATCTTAAGGAAATTGCGCAGAAGAATCTCTGTGCGGCTGTCGTTGATTGTTGCATTGGAATCCCGGTTTATTTTACTGATCTTGAGAGAAGGGCTGTGTTGGATGCGGCCACGATTGCTGGCCTGCACCCGCTTCGGTTAATTCATGAAATGACTGCCACTGCCTTGGCCTATGGGATTTATAAAACGGACCTTCCGGAGAGTGATCAGCTGAATGTTGCGTTTGTTGATGTTGGGCATTCTAGCATGCAGGTGTGCATTGCTGGCTTCAAAAAGGGACAGCTGAAAGTGTTGGCTCATTCTTTCGATCGGTCTTTGGGCGGTAGGGATTTTGACGAGGTTTTGTTCCATCACTTTGCTGGGAAGTTCAAGGAGGAGTACAAGATTGATGTTTTCCAGAATGCCAGGGCTTGCATAAGGCTCAGGGCTGCTTGTGCGAAGATGAAGAAGATGCTTAGTGCAAATGCTGAGGCACCTCTCACCATTGAGTGCTTGATGGACGAGAAGGATGTCAAGGGTTTCATCAAGCGAGATGAATTTGAGAGACTAAGTCTTCCAATTTTGGAACGTGTGAGGGGACCTTTGGAGAAGGCAGTTGCGGAAGCAGGTCTTACCATTGAAAATGTACACATGGTTGAGGTGGTTGGTTCAGGTTCTCGTGTACCGGCCATTAACAAAATATTGACAGATTTTTTCAAAAAGGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAAGGGTTGTGCATTGGAATGTGCAATTCTTAGTCCAACTTTCAAAGTGCGAGAATTCCAGGTCAACGATAGTCTTCCTTTCTCAATTGCTCTTTCATGGAAAGGTTCTGGTACAGATGCACAGGACAATGGACCAGAAAATCAGCAGAGTTCCCTTGTTTTTCCCAAGGGTAATCCCATACCAAGTATGAAGGCATTGACATTCTACAGGTCAGGAACATTTTCTGTTGATTTTCAATATGGTGATGTGAGTGCGACGCAAACACCTGCTAGGATCAGCACATATACTATTGGTCCATTCCAAACTACAATCAGTGAAAGGGCAAAGGTTAAGGTGAAAGTTCGTTTGAATCTGCATGGTATTGTATCTGTTGAGTCTGCAACGCTCTTGGAAGAGGAAGAAGTTGAGGTTCCAGTTTCCAAAGAAACAGCAGGGGGAAATGCTAAGATGGACATTGATGAAgctcctgctgatgctgctgcacctcctgctTCCAATGACACTGGTGCTAATATGCAAGATGCAAAGACTAGTACTGATGCTCCTGGGGTTGAAAATGGTATCCCTGAGAGTGGAGATAAGCCTTTGCAAACAGATACTGATACCAAGGCTCCAAAGAAAAAGGTTAAGAAAACAAACATTCCTGTAGCAGAGTTAGTTTATGGAGCAATGGTGCCTGTGGATGTCCAGAAAGCACTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAACGCAGTTGAGGCTTATGTTTATGACATGAGAAATAAGCTTAACGACAAATACCAAGAGTTTGTCACTGCTCAAGAGAGAGAAGATTTTACCACCAAACTTCAGCAAGTAGAAGATTGGCTTTATGAAGACGGTGAAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTAAAAAGGCAAGGTGATCCAATTGAAGGGCGTTACAAAGAATACATGGAGAGGGGTACTATAATTGAACAGTTCATCTATTGTGTAAATAGTTACAAAGAAGCTGCAATGTCGAAAGATCCCAAATTTGATCACATTGACATTAGCGAGAAACATAAGGTTATAAATGAATGTGCCGAAGCTGAGAAGTGGTTTAGGGAGAAGCAGCAGCAGCAGAGCTCACTTCCAAAACATGTCAACCCTGTACTCTTGTCAGCTGAAATAAGAAGGAAAGCTGAGGCTGTTGATAGGTTCTGCAAGCCAATTATGACAAAACCAAGGCCAGCCAAGCCGGCTACTTCCCCAGGACCAGGAACCTCATCTTCACAGGGTGATGAGCAGCAGCAACCTCAGGGGAGTGGTGAGACCAATAGTAATGAGAATGCTGGGGATAGTAGTCATGCTGCACCATCATCTACTGAACCAATGGAGACTGAAAAGTCTGACAGTGCAGGCTCTGCCTAA 2550 0.4404 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGEKQRFIGTAGAASTMMNPKNSISQIKRLVGRKFADPEFQRYLKSLPFVVTEGNDGYPLIHARYLGEAKTFTPTQVFGMMLSNLKEIAQKNLCAAVVDCCIGIPVYFTDLERRAVLDAATIAGLHPLRLIHEMTATALAYGIYKTDLPESDQLNVAFVDVGHSSMQVCIAGFKKGQLKVLAHSFDRSLGGRDFDEVLFHHFAGKFKEEYKIDVFQNARACIRLRAACAKMKKMLSANAEAPLTIECLMDEKDVKGFIKRDEFERLSLPILERVRGPLEKAVAEAGLTIENVHMVEVVGSGSRVPAINKILTDFFKKEPRRTMNASECVAKGCALECAILSPTFKVREFQVNDSLPFSIALSWKGSGTDAQDNGPENQQSSLVFPKGNPIPSMKALTFYRSGTFSVDFQYGDVSATQTPARISTYTIGPFQTTISERAKVKVKVRLNLHGIVSVESATLLEEEEVEVPVSKETAGGNAKMDIDEAPADAAAPPASNDTGANMQDAKTSTDAPGVENGIPESGDKPLQTDTDTKAPKKKVKKTNIPVAELVYGAMVPVDVQKALEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVTAQEREDFTTKLQQVEDWLYEDGEDETKGVYIAKLEELKRQGDPIEGRYKEYMERGTIIEQFIYCVNSYKEAAMSKDPKFDHIDISEKHKVINECAEAEKWFREKQQQQSSLPKHVNPVLLSAEIRRKAEAVDRFCKPIMTKPRPAKPATSPGPGTSSSQGDEQQQPQGSGETNSNENAGDSSHAAPSSTEPMETEKSDSAGSA 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00205 849 MobiDBLite consensus disorder prediction 796 849 - -
Cca11g00205 849 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 707 793 IPR029048 -
Cca11g00205 849 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Cca11g00205 849 CDD HSPA4_like_NDB 2 381 - -
Cca11g00205 849 PRINTS 70kDa heat shock protein signature 2 15 - -
Cca11g00205 849 PRINTS 70kDa heat shock protein signature 30 42 - -
Cca11g00205 849 PRINTS 70kDa heat shock protein signature 140 160 - -
Cca11g00205 849 PRINTS 70kDa heat shock protein signature 332 348 - -
Cca11g00205 849 PRINTS 70kDa heat shock protein signature 363 383 - -
Cca11g00205 849 PANTHER HSC70CB, ISOFORM G-RELATED 1 848 - -
Cca11g00205 849 Gene3D Actin; Chain A, domain 4 230 313 - -
Cca11g00205 849 Gene3D - 186 360 - -
Cca11g00205 849 Gene3D - 596 704 IPR029048 -
Cca11g00205 849 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 848 - -
Cca11g00205 849 MobiDBLite consensus disorder prediction 527 579 - -
Cca11g00205 849 MobiDBLite consensus disorder prediction 780 849 - -
Cca11g00205 849 Gene3D - 5 374 - -
Cca11g00205 849 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 627 IPR029047 -
Cca11g00205 849 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 597 693 IPR029048 -
Cca11g00205 849 Gene3D - 38 113 - -
Cca11g00205 849 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Cca11g00205 849 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 591 IPR029047 -
Cca11g00205 849 Pfam Hsp70 protein 3 694 IPR013126 GO:0005524|GO:0140662
Cca11g00205 849 MobiDBLite consensus disorder prediction 536 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00205 Cca-Chr11 2532341 2538318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00205 4 438 Calmodulin-binding Proteins AT1G16030 34.018 6.90e-81 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00205 K09489 - gmx:100816539 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00205 11 2532341 2538318 Cca11g00205 11 2532341 2538318 ECH
Cca10g00163 10 1781667 1786780 Cca11g00205 11 2532341 2538318 PCT