Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00203 ATGGGTGTGAACTCAAACAGAGTTGAGCACTTAGCTTGCAATAATGATGGCAGCAGCATGAAGATGCAAGCTGAGATACAAATGCCACCCTTTGAAATTCACAAGGTTATGTTGCCACCAGAGCGCACCACCTTGCAAAAACTCAGACACAGACTCTCTGAGATTTTCTTCCCTGATGATCCACTCCATAGGTTCAAGAACCAAACATGCCTCATGAAGCTCCTCCTTGCTCTCCAATACTTGTTCCCCATTTTCCAATGGGCCCCCAACTACAACCTTTCCCTTCTCCGTGCTGACATCATCTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATCAGCTATGCTAAGCTTGCAAACTTGCCACCTATTCTTGGATTATATTCCAGTTTTGTGCCTCCGTTGATATATTCACTGCTTGGAAGTTCTAGACATATCGGTGTTGGTCCAGTTTCAATTGCATCTTTGGTCATGGGATCAATGTTAAGCGAGACGGTTTCTTTTACTCAAGATCCAATTCTCTATCTTAAGTTGGCTTTCACTGCCACTTTCTTTGCCGGTTTGTTCCAATCTTCTCTGGGCATATTAAGGTTAGGATTTGTAATTGATTTTCTCTCAAAGGCAACACTGGTAGGTTTCATGGCCGGTGCAGCCATCATAGTGTCACTGCAGCAGCTGAAAGGGTTGCTTGGAATAGTTCATTTCACCAACAAGATGCAAATAACACCTGTACTTATCTCAGTTTTCAAGCAAAGACATGAGTGGTCATGGCAAAACGTTGTACTAGGATTCGGTTTCCTAGCATTCCTATTGACAACAAGGCATATTAGCTTGAAGAAGCCAAAATTATTCTGGGTTTCAGCAGCTGCCCCGTTGACATCAGTCATTCTCTCAACTATTTTAGTATTTATTCTCAGAAATAAGACTCATAAAATTCCTATTATCGGTGAATTGCCAAAGGGACTTAATCCACCATCATCAAACATGTTATACTTCAGTGGTCCTTATTTGGCTCTTGCTATCAAAACAGGACTTGTCACTGGGATCTTGTCCCTCACTGAAGGAATTGCAGTGGGGAGAACATTTGCTGCACTTAAGAATTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTCACTACAGGATCCTTTTCTCGATCAGCTGTTAACTATAACGCCGGGGCTCAGACAGCAGTCTCAAATATAATCATGGCATCAGCAGTTCTTGTGACCCTTTTGTTTCTCATGCCACTGTTCTACTACACACCGAATGTGGTCTTAGCAGCCATTATCATCACTGCAGTTGTAGGGCTAATAGATTACCAAGCTGCATATAAATTGTGGAAGGTTGACAAGCTTGATTTCTTGGCCTGCTTGTGCTCCTTTTTCGGTGTTCTGTTCATTTCAGTGCCTTTAGGCCTTGGAATAGCGGTGGCAATATCAGTTTTCAAGATCCTGCTTCATGTCTCTCGGCCAAACACATTGGTTTTGGGGAATATACCAGGGACACCAATATTCCACAACCTAAACCAATATAGAGAAGCTTTGAGGATTCCTTCATTTATCATTTTGGCTGTTGAGTCTCCTATCTACTTTGCTAATTCAACGTACCTCCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAGCGAGTAAAAGCAAACAATGAAAGCACATTGAAGTGCATAATTTTGGACATGACAGCCGTTACAGCCATAGACACAAGTGGGATCGATACTCTATGTGAACTCAGAAAAGTGCTAGACAAAAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATCAATCAAATATTTTGGATTCCTTTGGGTTGAAAGCAGTCTATCTTTCAGTAGGAGAAGCTGTGGCTGACATTTCATCTGCCTGGAAAGCTCAGCCTTGA 1977 0.4254 MGVNSNRVEHLACNNDGSSMKMQAEIQMPPFEIHKVMLPPERTTLQKLRHRLSEIFFPDDPLHRFKNQTCLMKLLLALQYLFPIFQWAPNYNLSLLRADIISGLTIASLAIPQGISYAKLANLPPILGLYSSFVPPLIYSLLGSSRHIGVGPVSIASLVMGSMLSETVSFTQDPILYLKLAFTATFFAGLFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQITPVLISVFKQRHEWSWQNVVLGFGFLAFLLTTRHISLKKPKLFWVSAAAPLTSVILSTILVFILRNKTHKIPIIGELPKGLNPPSSNMLYFSGPYLALAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVVGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVAISVFKILLHVSRPNTLVLGNIPGTPIFHNLNQYREALRIPSFIILAVESPIYFANSTYLQERILRWVREEEERVKANNESTLKCIILDMTAVTAIDTSGIDTLCELRKVLDKRSLQLVLANPVGNVMEKLHQSNILDSFGLKAVYLSVGEAVADISSAWKAQP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00203 658 TIGRFAM sulP: sulfate permease 83 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca11g00203 658 Pfam Sulfate permease family 96 475 IPR011547 GO:0016021
Cca11g00203 658 SUPERFAMILY SpoIIaa-like 532 649 IPR036513 -
Cca11g00203 658 PANTHER SULFATE TRANSPORTER 20 658 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca11g00203 658 Pfam STAS domain 528 646 IPR002645 -
Cca11g00203 658 Gene3D STAS domain 507 652 IPR036513 -
Cca11g00203 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Cca11g00203 658 PANTHER SLC26A/SULP TRANSPORTER-RELATED 20 658 - -
Cca11g00203 658 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Cca11g00203 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00203 Cca-Chr11 2514160 2518676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00203 1 658 Inorganic Solute Cotransporters AT3G15990 74.848 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00203 K17471 - gmx:100817604 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00203 11 2514160 2518676 Cca11g00203 11 2514160 2518676 ECH
Cca10g00159 10 1749710 1754425 Cca11g00203 11 2514160 2518676 PCT