Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00202 ATGGTTGCAGCTCTAGGGCCTGACGTATTTGACATGGATAAGCCTGTAGTTTTTAAATACGAAGATATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTTCTCGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACTAAAACAAAAGAATTTATGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAGTTGATTGGCTATGCAGCTAGTCATGAGGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGTCCCCCAAACAAAAGATATTGAAAAGAGTAAAATATAA 351 0.3675 MVAALGPDVFDMDKPVVFKYEDIFSSTDGFSDSNLLGHGTYGSVYYSLLLDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKVPQTKDIEKSKI 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00202 116 SUPERFAMILY Protein kinase-like (PK-like) 12 103 IPR011009 -
Cca11g00202 116 ProSiteProfiles Protein kinase domain profile. 30 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00202 116 Pfam Protein tyrosine and serine/threonine kinase 34 104 IPR001245 GO:0004672|GO:0006468
Cca11g00202 116 Gene3D Phosphorylase Kinase; domain 1 7 101 - -
Cca11g00202 116 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 104 IPR044812 GO:0019199|GO:0045087
Cca11g00202 116 PANTHER BNAA06G02020D PROTEIN 5 104 - -
Cca11g00202 116 ProSitePatterns Protein kinases ATP-binding region signature. 36 57 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00202 Cca-Chr11 2496160 2496693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00202 4 104 Receptor kinase-like Gene Family AT1G51940 72.277 3.42e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca11g00202 PK_Tyr_Ser-Thr 1.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00202 - - ccaj:114916548 211.846