Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00200 ATGATTCAAAATGGTTGCATTGTATCCCAAGGGTGTGCCCCTGTGAATTCTAGGTCGTGCAACCGTGTCATACCCAATACCTCTGTCTTTCGTTGCGCTTCTCGAATGCCTGCTAATGTGGCTGTCTCAAACATTCGGAGTTTTTGGGGACATAATCTAGAATGTAAATCCTGGTTGCCAAGAGGAATGACATTCTCAAACATGTTTGCTGCATCAAGCCTACGTTTAAGTGGGGATCTAAATATTCTCTTTCGCACACTCCCTGTGTTACCCCGGTTGCGCAAGTCTAATATGGCTCCTCGAGCATCGAAGGATGTCCCAACTAGCTTCCGTTATCCTCCAATGACCAAGAAACCGCAATGGTGGTGGAGATCATTAGCATGCCTCCCTTACCTCATGCCTCTCCACGAGACATGGATGTATGCTGAGACAGCATACAATCTTCACCCGTTTTTGGAATTCTTCGAATTCTATACATACCCTTTTCTCATGGCAATTGGGAGCCTACCTAGCTGGTTTCTCATGGCATACTTCTTTGTTGCATATCTCGGAATTGTGAGGCGAAAAGAATGGCCCCATTTCTTCAGGTTCCATGTTGTGATGGGAATGTTACTGGAGATTGCCCTGCAGGTTATAGGGACTGTGAGCCGTTGGATGCCTCTATCACTCTACTGGGGTAAAATGGGAATGCATTTCTGGACTGCAGTATCATTTGGTTATCTTTTTACTGTCTTGGAGTGCATAAGGTGTGCTCTTGTTGGTATGTATGCTGACATTCCTTTCATCTGTGACGCAGCATATATCCAAATACCATATGATTAA 822 0.4489 MIQNGCIVSQGCAPVNSRSCNRVIPNTSVFRCASRMPANVAVSNIRSFWGHNLECKSWLPRGMTFSNMFAASSLRLSGDLNILFRTLPVLPRLRKSNMAPRASKDVPTSFRYPPMTKKPQWWWRSLACLPYLMPLHETWMYAETAYNLHPFLEFFEFYTYPFLMAIGSLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLSLYWGKMGMHFWTAVSFGYLFTVLECIRCALVGMYADIPFICDAAYIQIPYD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00200 273 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 1 273 IPR005691 -
Cca11g00200 273 Pfam Chloroplast import apparatus Tic20-like 93 266 IPR005691 -
Cca11g00200 273 PANTHER HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED 1 273 - -
Cca11g00200 273 TIGRFAM 3a0901s05TIC20: chloroplast protein import component, Tic20 family 1 273 IPR005691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00200 Cca-Chr11 2474443 2476097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00200 88 273 Chloroplast and Mitochondria Gene Families AT4G03320 42.328 2.49e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00200 - - gmx:100818669 526.939