Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00194 ATGGAGAAAGAAGGTCTTGGACTTGAAATCACGGAGCTAAGGTTGGGTCTACCCGAGAGTGTGGTGAACAAGAATGAGAAGAAGAGGGTGTTCTCGGAAATTGAGGGTGTCGGAGACGAAAATAGCTCCTCCGGCGACCGGAAAATGGAGAAGAAGAATGAAGTGGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGAAGAACAGCATCAACGAAGCTTCGAAAATGTACGTGAAGGTTAGCATGGACGGTGCTCCATTTTTGCGTAAAATCGACCTTGCTATGCATAAGGGTTACTCCGATTTAGCCTTCGCTTTGGAAAAGCTCTTTGGTTGCTATGGAATGGTGGAATCGTTGAAGAATGCGGACAACTCTGAACAAGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCATGGGAAATGTTTATCGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGGTCTTCAACCAAAAGGATCTTTAAAGGGATTCATAGAGAGCGTGGCAAAGTGA 555 0.4667 MEKEGLGLEITELRLGLPESVVNKNEKKRVFSEIEGVGDENSSSGDRKMEKKNEVVGWPPVCSYRKKNSINEASKMYVKVSMDGAPFLRKIDLAMHKGYSDLAFALEKLFGCYGMVESLKNADNSEQVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIESVAK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00194 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 167 - -
Cca11g00194 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 167 IPR003311 GO:0005634|GO:0006355
Cca11g00194 184 ProSiteProfiles PB1 domain profile. 75 163 IPR000270 GO:0005515
Cca11g00194 184 Pfam AUX/IAA family 41 167 IPR033389 -
Cca11g00194 184 Gene3D - 69 172 - -
Cca11g00194 184 SUPERFAMILY CAD & PB1 domains 69 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00194 Cca-Chr11 2378848 2382601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00194 73 182 B3 DNA Binding Superfamily AT4G23980 33.636 3.58e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca11g00194 AUX_IAA 3.5e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00194 K14484 - gmx:547784 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00194 11 2378848 2382601 Cca11g00194 11 2378848 2382601 ECH
Cca11g00194 11 2378848 2382601 Cca10g00140 10 1513925 1517231 PCT