Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00192 ATGTCTGAATTAGCAGTGCAGGAAAAGATTAATAGCAACAAAATCAAGCAAGATTTTAAATTGCCACATCCCGCTCTCATTGTCTTCCTTTGTCCCAAGAAAGACTTGAAActctctctttctctctctttctctgtctgtgagctcctatctctctTCAATGGGGGTGCTGGAGCTTGCAAGATAGACAGACCCAGAATTGACACATCAAAATTGTACTTCTTTTTGCTGATCAGAATCTTTGCAAAAATGAAGAAAGAAAACAGTGTTATGCTGAAAGATCGGGAGCTCCCTGGTCGATTGACTCGTGCTCGAGCTGCTGCTGCTTTGCGTGCATCTGGACAACTGCCCCCTTTGAAAGATCAATCACAGCAAAATCAAAATCAGAAGCAGTTATCCAGAGTCAATTCAAAAAGACCAGTTTCTGGTAATACATGTGTTCAGCGAAAAAAGAGGGCTGTTCTTCAGGATGTTACTAATGTTTGCTGTGAAAATTCATACAAGGGTTGTTTCAATTCAACTAAAATTCAGGCTAAGAAAAGCAAGATGGCTAAGACTGGTCAAATTAATGTGTCCAAAGTGGCGCCTTCTGTTACTGTGGAGCCACTACAATTTCAAGCTGGCTCCAAAGCGAAGAGTTTACAGGAAGCAACATTGAAATCAGAAGATACTATGTGCTCAATTAATTTGGACAACAAAGAACTTCTACGGTTGAGTGTTAATGACTGTAGCAAGGGCTTTAGACTGACTGAAAGTCAAATGTCTGGAGTATTTGCTCGTCCTTTGATTTCTCAGAAGAAAGATAAGAAAGGCAACCTTTCAAAACTTTTGACTGAATTGAAGGATCCAGAAATCACTAATATAGATGATGATTTTGAAGATACTCAATTGTGCAGTCTCTATGCTGCTGATATCTATGACAAGATGCGTGTTGTTGAGCTTGCAAGAAGACCTTATCCAAACTTTATGGAGACAGTGCAGCGAGATATTACTCAAAGCATGCGTGCAATACTTGTTGATTGGCTTGTAGAGGTTTCTGAGGAATACAAATTGGTTACAGACACTCTTTACCTCACTGTGTATCTCATAGATTGGTTTCTCTCCAAAAATTACATTGAAAGACAAAGACTTCAGCTACTTGGCATCACCTGCATGCTAATTGCGTCGAAGTACGAAGAAATTAATGCCCCTCGTATTGAAGATTTCTGTTTCATCACAGACAATACATACACGAAAGTGGAGGTACTAAAAATGGAGAGTCAAGTGTTAAAGTCGTCTGAATATCAACTATTTGCTCCCACTATACAAACTTTCCTCAGGAGGTTTCTTCGAGCAGCACAAGCTTCATACGAGGCCCCCAACGTTGAATTGGAGTACTTGGCAAATTACCTAGCTGAACTAACCCTCATGGACTATAGTTTCTTGAATTTCCTTCCCTCTATCATTGCTGCATCAGCTGTGTTTCTTGCTAGGTGGACATTGGATCAGTCAAACCACCCATGGAATCCAACCCTTCAACACTATGCTTGTTGCAAAGCATCAGATTTGAAAACCACAGTTCTTGCATTACAAGACCTACAACTAAATATTAGTGGCTGCCCTCTAACTGCCGTTCGCACAAAATACAGACAAGACAAGTTTAATTGTGTAGCGGCTTTGTCTTCACCAAAACTGCTTGAAACTTTATTCTGA 1692 0.3895 MSELAVQEKINSNKIKQDFKLPHPALIVFLCPKKDLKLSLSLSFSVCELLSLFNGGAGACKIDRPRIDTSKLYFFLLIRIFAKMKKENSVMLKDRELPGRLTRARAAAALRASGQLPPLKDQSQQNQNQKQLSRVNSKRPVSGNTCVQRKKRAVLQDVTNVCCENSYKGCFNSTKIQAKKSKMAKTGQINVSKVAPSVTVEPLQFQAGSKAKSLQEATLKSEDTMCSINLDNKELLRLSVNDCSKGFRLTESQMSGVFARPLISQKKDKKGNLSKLLTELKDPEITNIDDDFEDTQLCSLYAADIYDKMRVVELARRPYPNFMETVQRDITQSMRAILVDWLVEVSEEYKLVTDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKVEVLKMESQVLKSSEYQLFAPTIQTFLRRFLRAAQASYEAPNVELEYLANYLAELTLMDYSFLNFLPSIIAASAVFLARWTLDQSNHPWNPTLQHYACCKASDLKTTVLALQDLQLNISGCPLTAVRTKYRQDKFNCVAALSSPKLLETLF 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00192 563 Gene3D - 304 552 - -
Cca11g00192 563 SMART cyclin_7 437 525 IPR013763 -
Cca11g00192 563 SMART cyclin_7 340 424 IPR013763 -
Cca11g00192 563 MobiDBLite consensus disorder prediction 117 144 - -
Cca11g00192 563 SUPERFAMILY Cyclin-like 433 558 IPR036915 -
Cca11g00192 563 PANTHER CYCLINS 129 563 IPR039361 -
Cca11g00192 563 CDD CYCLIN 433 523 IPR013763 -
Cca11g00192 563 Pfam Cyclin, C-terminal domain 433 555 IPR004367 -
Cca11g00192 563 SMART Cyclin_C_2 433 556 IPR004367 -
Cca11g00192 563 CDD CYCLIN 334 423 IPR013763 -
Cca11g00192 563 MobiDBLite consensus disorder prediction 115 144 - -
Cca11g00192 563 Pfam Cyclin, N-terminal domain 304 429 IPR006671 -
Cca11g00192 563 Gene3D - 318 431 - -
Cca11g00192 563 PANTHER CYCLIN-A2-4 129 563 - -
Cca11g00192 563 SUPERFAMILY Cyclin-like 293 429 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00192 Cca-Chr11 2354693 2363167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00192 84 563 Core Cell Cycle Gene Families AT1G80370 51.434 3.88e-164 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00192 K06627 - gmx:100789757 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00192 11 2354693 2363167 Cca11g00192 11 2354693 2363167 ECH