Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00191 ATGGTGGGAACTTCCTTAGCAGGGTTGCAAGAACATCTCAAGTTAGCCAGAGATTACGCCCTAGAAGGTCTCTACGACACCTCAATCATCTTCTTCGACGGCGCCCTCGCCCAGATCAACAAGCACCTAAGCACAGTTGAAGACCCTCTACTTCGCGCCAAATGGACCAACGTCAAGAAAGCGCTTTCCGAGGAAACGGAAGTTGTGAAGCAGCTAGATGCGGAGAGAAGGGCTTTCAAGGAAAACCCAATTGGAAGGCGCGCTGCTTCGCCTCCCATTAACGCAAAGTCTTCGTCTTTCGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCAAGCGCCGCTGCCGTCGATGATCCCGACGTGTGGCGCCCGCCCAGCAGGGACATCGCCAGCAGGAGGCCCGCCAGGTCCGCCGCGGTGGCTGCTCGGAAATCGCCGCAAGATGGGGCGTGGGCGCGTGGTGCTACCGGAAGAACCGCTGCTACTGGGCGTGGTGGTGCAAGGGGTGGTGGTGCCGCCAGTAGGGCTAACTCCGGGACTCGGAATTCGGCTACCGGAAAGAAAGGGGGTGCTTCTGGAAAGTCTAGCAAGACGGATGCAGCAGCTGTAACTAATAGTGATGCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGAGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGATGTTGCTGGGCTAACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCATTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGCACCACTTTCTTTAATGTATCTTCTGCAACTTTAGCTTCTAAATGGCGTGGGGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCGTATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCATCCGGGGAGCATGAATCATCCAGAAGGGTGAAGTCGGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTCATGGTTCTGGCTGCTACTAACTTCCCATGGGATATAGATGAGGCACTAAGGCGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGGATAAACTTGAAGACTGTTGAGGTGGCCCCTGATGTGAATATAGATGAAGTGGCTCGCCGGACAGAAGGCTACAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAATGGTATGAGGCGGAAGATAGCAGGAAAGACTCGCGATGAAATCAAGAACATGTCCAAGGACGAGATCTCAAAGGACCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCACGAGAAATGGTTTACTGAGTTTGGATCAGCATAA 1587 0.4997 MVGTSLAGLQEHLKLARDYALEGLYDTSIIFFDGALAQINKHLSTVEDPLLRAKWTNVKKALSEETEVVKQLDAERRAFKENPIGRRAASPPINAKSSSFVFQPLDEYPTSSSAAAVDDPDVWRPPSRDIASRRPARSAAVAARKSPQDGAWARGATGRTAATGRGGARGGGAASRANSGTRNSATGKKGGASGKSSKTDAAAVTNSDAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00191 528 MobiDBLite consensus disorder prediction 176 204 - -
Cca11g00191 528 CDD AAA 274 417 - -
Cca11g00191 528 Pfam ATPase family associated with various cellular activities (AAA) 280 417 IPR003959 GO:0005524|GO:0016887
Cca11g00191 528 Gene3D - 2 80 - -
Cca11g00191 528 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 528 - -
Cca11g00191 528 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 528 IPR028596 GO:0008017|GO:0008568|GO:0051013
Cca11g00191 528 Pfam AAA+ lid domain 439 480 IPR041569 -
Cca11g00191 528 ProSitePatterns AAA-protein family signature. 389 408 IPR003960 GO:0005524|GO:0016887
Cca11g00191 528 Gene3D - 418 504 - -
Cca11g00191 528 PANTHER AAA DOMAIN-CONTAINING 4 528 - -
Cca11g00191 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 524 IPR027417 -
Cca11g00191 528 SMART AAA_5 276 419 IPR003593 -
Cca11g00191 528 Coils Coil 62 82 - -
Cca11g00191 528 Pfam Vps4 C terminal oligomerisation domain 481 526 IPR015415 -
Cca11g00191 528 MobiDBLite consensus disorder prediction 111 222 - -
Cca11g00191 528 Gene3D - 238 519 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00191 Cca-Chr11 2339734 2344073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00191 232 520 Calmodulin-binding Proteins AT3G56690 39.933 1.63e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00191 K07767 - gmx:100787634 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00191 11 2339734 2344073 Cca11g00191 11 2339734 2344073 ECH
Cca10g00134 10 1475202 1478613 Cca11g00191 11 2339734 2344073 PCT